Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P22
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protei...    29   3.2  
U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    28   4.3  
Z66513-6|CAA91335.1|  565|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protein
           1, isoform a protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 282 QFGALQRQTSKNNEEY--LWMVWRS*SYVRRRLHGNGK 389
           Q+G LQ   + NN         WR+ S  RR+  GNGK
Sbjct: 116 QYGGLQTNNNNNNINMNSFEPYWRNGSIYRRQFEGNGK 153


>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 407 INYYYLIYTVCVMFQYNELFC 469
           INYYYL+ T+C +      FC
Sbjct: 119 INYYYLMVTLCALISLLVTFC 139


>Z66513-6|CAA91335.1|  565|Caenorhabditis elegans Hypothetical
           protein F54D5.9 protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 402 RLQWLFHCHEAVDARTIKNATPSTSILHYFCLSASVELRIVNLTK 268
           R+ W + C +  D  T++ + P+   L    L+    LRI+N +K
Sbjct: 328 RVDWAYFCEDDSDTFTLRKSEPNYRKLLSTLLNGIRALRIMNNSK 372


>U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical
           protein T01D1.7 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 326 ILVDGVAFLIVRASTASWQWKSHCRRYINYYYLIYTVCVM 445
           ILVD VA LI+ A    WQ+        N + + YTV ++
Sbjct: 224 ILVDIVAMLIMIAEFLEWQFPLALFAVKNVFPVTYTVVIL 263


>AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical
           protein M57.1 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 APKDRNPNSTQSTSYNPWNLLFSTRT 227
           AP D  PN  Q T  NP+N + +  T
Sbjct: 439 APYDEAPNEDQDTQLNPFNAMSNLTT 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,073
Number of Sequences: 27780
Number of extensions: 247159
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)