Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P20
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 111 4e-26
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 46 2e-06
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 45 5e-06
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 44 9e-06
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 44 1e-05
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 44 2e-05
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 41 8e-05
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 40 2e-04
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 39 3e-04
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 36 0.002
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 36 0.004
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 33 0.016
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 32 0.037
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.35
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 28 0.60
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 4.3
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 5.6
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 7.4
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 7.4
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 24 9.8
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 24 9.8
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 111 bits (268), Expect = 4e-26
Identities = 46/80 (57%), Positives = 62/80 (77%)
Frame = +1
Query: 61 VPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 240
VPRNF+LLEELE+G+KG+G+ + S+GL + DD+TL+ W I+GP + +ENR+YSLKI
Sbjct: 4 VPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIH 63
Query: 241 CDTRYPDEPPTARFISRINM 300
CD YPD PP F+SRIN+
Sbjct: 64 CDANYPDAPPIVTFVSRINL 83
Score = 51.2 bits (117), Expect = 7e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 317 QTGLVDNRQVPILARWQRDYTIKTVLQELRRLMTLTENMKLSQPPEGS 460
+TG V+ ++ L W+R+Y+++TVL +L++ M + N KL QPPEGS
Sbjct: 89 ETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGS 136
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 46.4 bits (105), Expect = 2e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +1
Query: 76 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECDTRY 255
RL+ + ++ Q+ G +S SD+ M W +IIGP TP+E+ + L + D +Y
Sbjct: 8 RLMRDFKRMQQDPPAG-VSASPVSDNVML---WNAVIIGPADTPFEDGTFKLVLSFDEQY 63
Query: 256 PDEPPTARFIS 288
P++PP +F+S
Sbjct: 64 PNKPPLVKFVS 74
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 45.2 bits (102), Expect = 5e-06
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 163 LTHWTGMIIGPPRTPYENRMYSLKIECDTRYPDEPPTARFISRINMNCVNSADWTC 330
L HW I+GP +PY ++ L I T YP +PP F +RI +NS C
Sbjct: 30 LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSIC 85
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 44.4 bits (100), Expect = 9e-06
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 148 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECDTRYPDEPPTARFIS 288
D D L HW G I GP T YE + + + YP PPT F S
Sbjct: 53 DSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTS 99
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 1e-05
Identities = 25/76 (32%), Positives = 36/76 (47%)
Frame = +1
Query: 67 RNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECD 246
R+ R+ +EL Q+ G W + D ++H GM GP TPYE + + IE
Sbjct: 5 RSRRIAKELADVQQDKQAGIQVWTINDD----ISHLKGMFRGPEGTPYEGGYFVVDIEIP 60
Query: 247 TRYPDEPPTARFISRI 294
YP PP F ++I
Sbjct: 61 IDYPFRPPKMNFDTKI 76
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +1
Query: 76 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECDTRY 255
RL +E Q G G + L+ D+ + HW +I GP TPYE + L I Y
Sbjct: 7 RLHKEYASFQAGDISGLLL--LKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGY 64
Query: 256 PDEPPTARFISRI 294
P PP+ F ++I
Sbjct: 65 PISPPSVYFQTKI 77
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 41.1 bits (92), Expect = 8e-05
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 76 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECDTRY 255
RL++E ++ + DG I+ G ++DD W +I GP TP+E +Y ++ + Y
Sbjct: 9 RLMKEYKELTENGPDG-ITAGPSNEDDFFT--WDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 256 PDEPPTARF 282
P PPT +F
Sbjct: 66 PLGPPTLKF 74
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 39.5 bits (88), Expect = 2e-04
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 76 RLLEELEQGQKGVGDGTISWGLESDDD-MTLTHWTGMIIGPPRTPYENRMYSLKIECDTR 252
RL EE +Q ++ G + +S D + L +W I G P+T +E +Y L +
Sbjct: 8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 67
Query: 253 YPDEPPTARF 282
YP PP RF
Sbjct: 68 YPTRPPKCRF 77
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 39.1 bits (87), Expect = 3e-04
Identities = 25/72 (34%), Positives = 35/72 (48%)
Frame = +1
Query: 79 LLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECDTRYP 258
L ++L++ QK G S GL DD ++ W MIIGP T YE + + YP
Sbjct: 10 LRKQLKEIQKNPPQG-FSVGLV--DDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYP 66
Query: 259 DEPPTARFISRI 294
PP +F + I
Sbjct: 67 LMPPKMKFTTEI 78
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 163 LTHWTGMIIGPPRTPYENRMYSLKIECDTRYPDEPPTARFIS 288
+ W +I GPP TPYE Y + YP +PP R I+
Sbjct: 34 ILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMIT 75
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 35.5 bits (78), Expect = 0.004
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 154 DMTLTHWTGMIIGPPRTPYENRMYSLKIECDTRYPDEPPTARFISRI 294
D L HW +GP + Y + ++ YP +PPT F +RI
Sbjct: 33 DDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRI 79
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 33.5 bits (73), Expect = 0.016
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 190 GPPRTPYENRMYSLKIECDTRYPDEPPTARFISRI 294
GP TPY ++ + +E + YP + P+ F++RI
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRI 72
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 32.3 bits (70), Expect = 0.037
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +1
Query: 76 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECDTRY 255
R+++E+E + G ++ E + L ++ + GP ++ YE + L++ Y
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTEDN----LRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61
Query: 256 PDEPPTARFISRI 294
P PP RF+++I
Sbjct: 62 PMMPPNVRFLTKI 74
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.1 bits (62), Expect = 0.35
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 70 NFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHW----TGMIIGPPRTPYENRMYSLKI 237
++RLL E+ G +WG+ +DD ++ W +G I+ +TPYE M L+
Sbjct: 340 SYRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGFIV-QRKTPYEEAMTKLEE 398
Query: 238 E 240
E
Sbjct: 399 E 399
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 28.3 bits (60), Expect = 0.60
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 187 IGPPRTPYENRMYSLKIECDTRYPDEPPTARFISRI 294
I P Y+ + +I+ D YP +PP + +++I
Sbjct: 58 IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKI 93
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 67 RNFRLLEELEQGQKGVGDGTISW 135
R+ R+LE LEQ +G+ GT+ +
Sbjct: 628 RSVRMLEPLEQHGRGIYSGTLGY 650
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 220 FYFHKESWGDQLSCQSNE--*ESCHRRSL 140
FY K+S+ D +SC+S E E+ RR+L
Sbjct: 336 FYKPKQSFFDNISCESKEKGMEAADRRAL 364
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 159 DSYSLDWHDNWSPQDS 206
DS S W+D WSP S
Sbjct: 24 DSPSAGWNDPWSPHSS 39
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.6 bits (51), Expect = 7.4
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 315 TVDTVHIDSRNK--TSCRWLIRITSITFNFKRIHSIFIRSPGGTNYHASPMSKS 160
T+D + + ++ T C L I+ N K I FI N+H S + KS
Sbjct: 228 TLDVLLLTKKDSSMTLCSLLNAISFEPINLKAIPLFFIICADSINFHLSSVEKS 281
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 291 NQYELCQQCRLDLLII-GKFQSLQDGS 368
N Y L ++ ++DLLII G FQ+L++ S
Sbjct: 30 NLYILAEKRKVDLLIIGGDFQALRNVS 56
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 190 GPPRTPYENRMYSLKIECDTRYPDEPPTARFISRINMNCVN 312
GPP T Y + + S + D D P +SR+ ++C N
Sbjct: 165 GPPITEYYDTLTSAFSKIDPSMQDSPT----VSRVVVDCAN 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,296
Number of Sequences: 5004
Number of extensions: 32316
Number of successful extensions: 83
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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