Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P19
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    27   3.1  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.5  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   9.5  

>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 YVTDNWGTDANGFKLVITAVKDP 491
           Y T NW T+ NG  ++I ++  P
Sbjct: 94  YATRNWQTNENGIVIIIQSMSHP 116


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 339 PAKVDLSCRNTKQQVGALFTRSNFVTL-KYVTDNWG 443
           P KV +SC++ K  +G  F R    +L  Y TD  G
Sbjct: 99  PTKVVVSCKSNKGSIGPRFVRELEGSLSSYPTDTLG 134


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 640  LPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSR 524
            +PAPVP    + A   SS P+A  S  S+ +     N+R
Sbjct: 1922 MPAPVPLTGKETAVPLSSMPNAPPSVASNAKLPPASNNR 1960


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = -2

Query: 631 PVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLHPCLGSLTAVITNLKPF 452
           P P          S +PS  W    H+  A+ + +   HL S    L S TA    + P 
Sbjct: 211 PTPDSQSMLEYAGSIEPSVFWFPKKHLEEAILEETS--HL-SFKEVLSSTTA--NMITPL 265

Query: 451 ASVPQLSVTYLSVTKL 404
           A   +  V  ++ +KL
Sbjct: 266 AEKNKTEVLQVTPSKL 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,845
Number of Sequences: 5004
Number of extensions: 42563
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)