Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P19
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0437 - 3347960-3349246 32 0.34
05_04_0116 + 18131510-18133192 32 0.46
10_01_0329 - 3599571-3600554 30 1.4
10_01_0322 + 3516922-3517899 30 1.4
10_01_0320 + 3506183-3507109 29 3.2
07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823 29 3.2
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 29 3.2
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 29 4.2
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 4.2
03_02_0329 - 7498951-7498989,7499219-7499507,7499590-7499760,749... 29 4.2
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 28 5.6
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 7.4
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610 27 9.8
>11_01_0437 - 3347960-3349246
Length = 428
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -2
Query: 631 PVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSL--HPCLGSLTAVITNLK 458
P P +G + +SS SA TPS S SR L L+S+ P + A+ + +
Sbjct: 3 PSPSAAGAASPSNSSAASASDPTPSWWESVSQARSRILALSSILPAPADSDVAALADSDR 62
Query: 457 PFASVPQLSVTYLSVTKLLR 398
P ++ + S Y++++ LR
Sbjct: 63 PARALLRSSAAYVALSAALR 82
>05_04_0116 + 18131510-18133192
Length = 560
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 643 ALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLHPCLGSLTA 476
A PAP PP + A ++S + + +H R+ T S LH L C +L A
Sbjct: 113 AAPAPAPPLATMAVAQNASLAAVASALAAHRRNQATHRSAALH-GHLRRCAEALAA 167
>10_01_0329 - 3599571-3600554
Length = 327
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 637 PAPVPPFSGQRAAVSSSDPSAQWST 563
PAP PP S +RAA +P+A ST
Sbjct: 6 PAPAPPASRKRAAAPDDEPTATGST 30
>10_01_0322 + 3516922-3517899
Length = 325
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 637 PAPVPPFSGQRAAVSSSDPSAQWST 563
PAP PP S +RAA +P+A ST
Sbjct: 8 PAPAPPASRKRAAAPDDEPTATGST 32
>10_01_0320 + 3506183-3507109
Length = 308
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 637 PAPVPPFSGQRAAVSSSDPSA-QWSTPS 557
PAP PP S +RAA +P+A + STP+
Sbjct: 6 PAPAPPASRKRAAAPDHEPTASRSSTPA 33
>07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823
Length = 224
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 14 RHSEPAPPRHEGERSAYAVHRDLLCCNPHQC 106
R + P PP G+ A +H LL NPH C
Sbjct: 3 RRAHPPPPA-VGDGDAQLLHHPLLRLNPHDC 32
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 637 PAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLH 500
P+P+P S + SSS P A STPS SA + + HL+ H
Sbjct: 40 PSPIPSTSPRPTLRSSSLPPA--STPSPSSSASSSSGSLHHLHPTH 83
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 421 LSVTKLLRVNRAPTCCLVLRHDRSTLAGVVA*APS*TYRWS 299
LSV K L V P CC++ R ++ AG+ + S + W+
Sbjct: 240 LSVLKHLEVKEIPKCCVLQRLSKNAKAGLPSVRKSDLHVWT 280
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 546 DLMCDGVDHCADGSDEDTAALCPENG 623
D MC GV+ DGS++ ++ P++G
Sbjct: 4216 DFMCSGVNQATDGSEDIFDSVIPDDG 4241
>03_02_0329 -
7498951-7498989,7499219-7499507,7499590-7499760,
7499839-7500345,7500347-7500726,7500814-7501266
Length = 612
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 246 CASER*LCNPDSFRSWTTARRHPASCTDVVESGPCIAIP 130
CAS NP S S R P SCT +V P +P
Sbjct: 131 CASTELAENPTSVDSAVDHRTEPTSCTLIVRVMPTFTVP 169
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 513 RCKQREFCVSADLMCDGVDHCADGSDEDTAALCPE 617
RC+ + D + D C DG+DE + CPE
Sbjct: 44 RCRDGSGRFARDKLNDDFCDCPDGTDEPGTSACPE 78
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 601 AVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLHPCLGS 485
A S SD +Q TPS + L QNS HL+ + GS
Sbjct: 22 AESRSDSQSQRRTPSTTQPQLPQNSPAPHLHCRYATRGS 60
>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
Length = 913
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 144 KDHFLQRQYRKL-DGGVLWSKNERNLDCTVTFQTHSILQRFMLHFDLLQLDCNDHLYVYD 320
+++ + +RKL D ++ + RN T +TH I+ F+L+ L Q L+ +
Sbjct: 466 EEYTADKNFRKLIDRNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLAQRFIGTSLHDHP 525
Query: 321 GAHATTPAKVDLSCRNTKQ 377
T LS KQ
Sbjct: 526 RVGINTSNARHLSVDAAKQ 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,050
Number of Sequences: 37544
Number of extensions: 351119
Number of successful extensions: 1411
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -