Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P17
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 109 2e-25
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 106 2e-24
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 1.8
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 2.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.1
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 4.1
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 5.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.2
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 9.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.5
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 109 bits (263), Expect = 2e-25
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Frame = +3
Query: 126 FLIKHPLQNTWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 302
F+ HPLQ+ W+LWF + W + L E+ +F TVE+FW ++ I S L DY
Sbjct: 60 FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDY 119
Query: 303 AVFKHGIRPMWEDDANKMGGRWLISLEKKQRNSDLDRFWLDVVLLMIGENFE-NS*EICG 479
+ F GIRP WED N GG+W + + K + S+LD WL +VL IGE + E+ G
Sbjct: 120 SYFLKGIRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTG 177
Query: 480 AVVNVRAQLDKIGIWTADAS 539
V N+R +I +WT + +
Sbjct: 178 VVCNMRKGFYRIAVWTRNCN 197
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 106 bits (255), Expect = 2e-24
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +3
Query: 126 FLIKHPLQNTWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 302
F +KHPL W+LWF W E + TF++VE+FW ++++I S L DY
Sbjct: 34 FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDY 93
Query: 303 AVFKHGIRPMWEDDANKMGGRWLISLEKKQRNSDLDRFWLDVVLLMIGENFE-NS*EICG 479
+ F+ G+RP WED NK GG+W K + + LD WL VL IGE + E+ G
Sbjct: 94 SFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMG 152
Query: 480 AVVNVRAQLDKIGIWT 527
V+N+R ++ +WT
Sbjct: 153 VVINMRKGFYRLAVWT 168
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 532 SAVQIPILSNCALTLTTAPQISQEFSKFSPIIRRTTSNQKRSK--SELRCFFSKLMSHLP 359
SAV P+ N ++++ IS P + +S K S S + F SKL +HLP
Sbjct: 520 SAVLQPLEVNRSISIPPPKSISPSILH-KPSLESASSTPKISSCSSTPKPFNSKLRAHLP 578
Query: 358 PILFAS 341
P+ S
Sbjct: 579 PLSIGS 584
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 252 ISKSPLLYQMWSTLLDSPPMFCFYRCRKTRDSRCSATGALSGIQAAPL 109
I + PL+ Q S LL S CF R D+ SA G L ++ PL
Sbjct: 1301 IRRGPLVKQFASKLLQSLKSSCFDRNAAVSDAFASAIGYL--LRVCPL 1346
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 126 FLIKHPLQNTWSLWFYDNDRNKTWEENLIELTTF 227
F I+ L+ + + FY N +NK W N +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 374 DEPSPTHFICIIFPHGPDTMLENGIVMS 291
D PSP CI++ G T L G+++S
Sbjct: 234 DPPSPEEICCIMYTSG-STGLPKGVILS 260
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = -1
Query: 146 QRVLYQEFRRHLCISVGFSLRRSRSFYIFCIIPSHVTRISRC 21
+ +LY + C+++G + Y+ + P+ V R+++C
Sbjct: 278 EAILYPQILHGECVAIGMVKEAELARYLGILKPNAVGRLTKC 319
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 435 GEPHLTRNDLNQNYVAF--FLN**AISHPFYLHHLPT 331
G H T+NDL Q+YVA+ L A +HPF + P+
Sbjct: 151 GTTH-TQNDLYQSYVAYPDALPLFAATHPFERRYPPS 186
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 499 ALTLTTAPQISQEFSKFSPIIRRTTSNQKRSKSELRCF 386
A T + ++ F+ FSP+ R S + LRCF
Sbjct: 154 ASTERSYKELPLRFADFSPLHRNEASGALSGLTRLRCF 191
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 120 PEFLIKHPLQNTWSLWFYDNDRNKTW 197
PE LI P TW W Y + + + W
Sbjct: 444 PETLISDPKIYTWWGWLYLDLKERRW 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,271
Number of Sequences: 5004
Number of extensions: 48058
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -