Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P17
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 124 5e-29
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 116 2e-26
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 115 2e-26
02_04_0430 + 22834405-22834839 28 4.1
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 4.1
06_01_0163 + 1273171-1273323,1273478-1273693 27 7.2
05_07_0343 - 29404816-29405412 27 7.2
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242... 27 9.6
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 124 bits (299), Expect = 5e-29
Identities = 61/138 (44%), Positives = 84/138 (60%), Gaps = 4/138 (2%)
Frame = +3
Query: 138 HPLQNTWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYA 305
HPL++ W+ WF DN + K TW ++ + TF TVEDFW LY++I PS+L G D+
Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFH 110
Query: 306 VFKHGIRPMWEDDANKMGGRWLISLEKKQRNSDLDRFWLDVVLLMIGENFENS*EICGAV 485
FK+ I P WED GG+W S + + D WL +L MIGE F+ EICGAV
Sbjct: 111 CFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAV 166
Query: 486 VNVRAQLDKIGIWTADAS 539
V+VR + ++I IWT +A+
Sbjct: 167 VSVRGKQERIAIWTKNAA 184
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 116 bits (278), Expect = 2e-26
Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Frame = +3
Query: 138 HPLQNTWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 308
HPL+ + LW+ R++++E+N+ ++ F TVE FW Y H+ P L D +
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHL 108
Query: 309 FKHGIRPMWEDDANKMGGRWLISLEKKQRNSDLDRFWLDVVLLMIGENFENS*EICGAVV 488
FK GIRP+WED AN+ GG+W+I +K RFW D+VL+++G+ + S ++CG V+
Sbjct: 109 FKEGIRPLWEDPANRSGGKWIIRFKKTVSG----RFWEDLVLVLVGDQLDYSDDVCGVVL 164
Query: 489 NVRAQLDKIGIWTADAS 539
+VR D + +W +AS
Sbjct: 165 SVRFNEDILSVWNRNAS 181
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 115 bits (277), Expect = 2e-26
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Frame = +3
Query: 138 HPLQNTWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 308
H L W+ W+ + K W +L + TFDTVE+FW LY I PS++ D+ +
Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHL 89
Query: 309 FKHGIRPMWEDDANKMGGRWLISLEKKQRNSDLDRFWLDVVLLMIGENFENS*EICGAVV 488
FK G+ P WED GG+W + +K + L+ WL+ ++ +IGE F+ S EICG V
Sbjct: 90 FKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICGVVA 146
Query: 489 NVRAQLDKIGIWTADAS 539
+VR + DK+ +WT AS
Sbjct: 147 SVRQRGDKLALWTRTAS 163
>02_04_0430 + 22834405-22834839
Length = 144
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 385 FSKLMSHLPPILFASSSHMGRI 320
FS++ S LPP L + SH+GRI
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 282 LRQGHDYAVFKHGIRPMWEDDANKMGGRWLISLEKKQRNSDL-DRFWLD 425
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>06_01_0163 + 1273171-1273323,1273478-1273693
Length = 122
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 114 VPPEFLIKHPLQNTWSLWFYD 176
+P E+L+K P + TWS W +D
Sbjct: 98 LPAEYLVKRPRRRTWS-WRHD 117
>05_07_0343 - 29404816-29405412
Length = 198
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 270 LPSELRQGHDYAVFKHGIRPM-WEDDANKMGGRW 368
+P E GH+ ++G++PM W++ + RW
Sbjct: 55 MPREFVDGHNQLRARYGLQPMRWDNKLARQARRW 88
>09_04_0704 +
19623046-19623386,19623583-19623792,19623872-19624223,
19624320-19624444,19624578-19624668,19624817-19625050
Length = 450
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 377 TDEPSPTHFICIIFPHGPDTMLENGIVMSL 288
T EP P H++ +I T+L +GIV L
Sbjct: 57 TIEPDPLHWLHLILASSRSTLLSHGIVAIL 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,769
Number of Sequences: 37544
Number of extensions: 305466
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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