Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P16
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   2.6  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    26   3.4  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   4.5  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   6.0  
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|...    25   6.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.9  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 297 TTDFILQEKPSAYAPEATLIQYYSYNKKIYEY 392
           TTDFI   K  + +PEA     YSY+  +  Y
Sbjct: 250 TTDFIPYSKDLSTSPEAHRTSIYSYSANLPNY 281


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +3

Query: 21  VYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLYFYGKDKAPYVVTED 158
           V +++DG   N+    + ++ + +L ++N L++ G  +A  + TE+
Sbjct: 375 VVRLADGFKLNDFRLVINNSNKFILLFANTLFYIGGLEAVSITTEE 420


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 309 ILQEKPSAYAPEATLIQYYSYNKKIYEYN 395
           IL  KP++Y  +  +  Y+S N  I+E N
Sbjct: 4   ILYPKPTSYLYQPFIKAYFSLNMAIFEIN 32


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
 Frame = +3

Query: 150 TEDGVKKILGLPENPTYVRLIKPPFIVEDGAVYAADDKVYIIYVNGTSETTDFILQEK-- 323
           +++GV   L L   P Y      P +  +   Y   D+V+I   +  +    F  ++   
Sbjct: 71  SQNGVTAYLALLGEPCYAYGTDYPLLFLN-VTYEEADRVHISIKDANNTQFQFTSRKDLW 129

Query: 324 -PSAYAPE---ATLIQYYSYNKKIYEYNVLQIVLGELLSDLK 437
               Y+P      L+  +SYN   +E+ V +   GE+L D +
Sbjct: 130 DAPLYSPSYNNTNLLYNFSYNANPFEFWVTRKSDGEVLFDTR 171


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 420 IHPELFAVHCIRKSSCYNCSIV*AWLQERTHS 325
           IH  +  + C   SS  NC  +   L +R HS
Sbjct: 360 IHQSIHEISCPHHSSSDNCLFILISLMDRLHS 391


>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 93  LDYSNNLYFYGKDKAPYVVTEDGVKKILGLPEN--PTYVR 206
           ++  +NLY Y   + P  V  +  K+I  LP N  PT ++
Sbjct: 26  VERQSNLYIYRNPELPLRVRLEAKKRIEALPTNAHPTKIK 65


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 360 YYSYNKKIYEYNVLQIVLGELLSDLKNLL 446
           ++SY+ K+Y+Y+ + I +    S  +NLL
Sbjct: 608 FFSYSSKMYKYDRVSIPVITRASSSRNLL 636


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 375 KKIYEYNVLQIVLGELLSDLKNLLEDKVEL 464
           +K  E NVL   L + L+ +++L  DK+EL
Sbjct: 757 EKNKEINVLNSELADKLAQIRHLESDKMEL 786


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 372  NKKIYEYNVLQIVLGELLSDLKNLLEDKVELIQ 470
            +K+I E   L+  L E++ +LKN +E+K+E+ Q
Sbjct: 1017 DKEIVE--ALETRLLEIVEELKNQVEEKIEVPQ 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,611
Number of Sequences: 5004
Number of extensions: 43321
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)