Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P16
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 1.5
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 28 4.5
03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710... 28 4.5
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 28 4.5
01_05_0645 - 23899579-23904483 28 4.5
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 27 6.0
08_01_0434 + 3809681-3810016,3810039-3811100 27 6.0
05_01_0206 + 1487034-1489430 27 6.0
06_01_0476 - 3388176-3389267 27 7.9
05_05_0299 - 23930657-23932627 27 7.9
02_02_0537 + 11308195-11309667 27 7.9
01_06_1049 - 34114487-34114579,34115406-34115557,34115840-341164... 27 7.9
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -3
Query: 456 LYLPKDSSSR*VIHPE-LFAVHCIRK---SSCYNCSIV*AWLQERT 331
LYL DS + PE + HC+RK ++C+N S++ WL E T
Sbjct: 1575 LYLTIDSCIDLITLPEPIKNCHCLRKLEITNCWNFSVLPEWLGELT 1620
>06_03_0287 - 19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 57 KLEDVKDAQEIVLDYSNNLYFYGKDKAPYVVTEDGVKKILGLPENPTYVRLIKPPFIVED 236
+++D + A + L Y N+ F G+DK V + + LGL P +L+ + +
Sbjct: 835 EVKDKELAYQAWLGYYNSNKFIGRDKYQLVSLANEFSRSLGLNNPPAVPKLVLRKMGLNN 894
Query: 237 GAVYA 251
VYA
Sbjct: 895 IPVYA 899
>03_02_0286 +
7100342-7100504,7100613-7100719,7102109-7102240,
7102383-7102539,7103099-7103220
Length = 226
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 18 DVYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLYFY 122
+V + GN E +E + D +LD + LYF+
Sbjct: 67 EVKRAVQSGNVQEAIEKINDLNPTILDTNPQLYFH 101
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 460 STLSSKRFFKSLSNSPRTICST 395
S + KR F+ L+NSP IC+T
Sbjct: 748 SQIGMKRTFQDLTNSPNDICNT 769
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 48 KNEKLEDVKDAQEIVLDYSNNLYFYGKDKAPYVVTE 155
K K++D+ +E++LDY G+DK P V +
Sbjct: 1197 KRAKIQDIPHHEEMLLDYREEKSRDGQDKLPMEVEQ 1232
>12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 224 KWWLYQTYVSWILW*T*NLFNAVFGY 147
KWW++ Y+S + W LF FG+
Sbjct: 1237 KWWIWLYYISPMSWTLNLLFTTQFGF 1262
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 362 VLYERGFRSVRTRFLLKNKIGRLTCSVHVDDIDFVISRVYRSIFND 225
VLY+ G +VRT L ++ LT SV V D +++ R + +D
Sbjct: 200 VLYDPGEHAVRTMPALPYQVRLLTTSVTVGDDLYILDTSRRHVNDD 245
>05_01_0206 + 1487034-1489430
Length = 798
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 178 PRIFLTPSSVTT*GALSLP*KYRLFE*SKTISCASFTSSNFSFLLPP 38
P + L P+S +T + P + E + T+ CAS T+S+ S + P
Sbjct: 11 PLLLLAPASASTVAIAAGPTACAVAEGNSTVYCASATNSSSSAAVAP 57
>06_01_0476 - 3388176-3389267
Length = 363
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 395 IVFVNLLVITVVLYERGFRSVRTRFLLKNKIGR 297
+VFV L+++ VVL+ G + RFLL+ GR
Sbjct: 30 VVFV-LVILAVVLFVSGLLHLLVRFLLRRGRGR 61
>05_05_0299 - 23930657-23932627
Length = 656
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 27 KVSDGGNKNEKLEDVKDAQEIVLD 98
K DGGNK + E+ K+ ++I++D
Sbjct: 220 KGGDGGNKEDDDEEKKETEQILID 243
>02_02_0537 + 11308195-11309667
Length = 490
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 48 KNEKLEDVKDAQEIVLDYSNNLYFYGKDKAPYVVTE 155
K KL+D+ +E +LDY G+DK P V +
Sbjct: 78 KRAKLQDIPHHEERLLDYREEKSRDGQDKLPMEVEQ 113
>01_06_1049 -
34114487-34114579,34115406-34115557,34115840-34116418,
34117551-34117941,34118170-34118583
Length = 542
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 48 KNEKLEDVKDAQEIVLDYSNNLYFYGKDKAPYVVTE 155
K KL+D+ +E +LDY G+DK P V +
Sbjct: 468 KRAKLQDIPHHEERLLDYREEKSRDGQDKLPMEVEQ 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,575
Number of Sequences: 37544
Number of extensions: 246072
Number of successful extensions: 582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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