Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P13
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.41
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 0.71
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 0.94
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 1.6
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.9
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 3.8
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 3.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.7
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 24 8.8
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.41
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 109 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 216
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 0.71
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 211 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 339
DIV F ++ K + +T+LVD SK +T+I YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 0.94
Identities = 22/110 (20%), Positives = 47/110 (42%)
Frame = +1
Query: 16 IHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKV 195
+ + D A+D + + ++ LA L +PDA AD P +V +L
Sbjct: 1082 VEDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELAS 1141
Query: 196 PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAG 345
+ + ++ + ++ D+ L L+ K+ Q+T+++ +L G
Sbjct: 1142 RAGKYEELIKYLLMARSKMHEPDVDSAL---LIAYAKTNQLTEMETFLIG 1188
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 1.6
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = -2
Query: 299 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 132
++TN V + I++ S TT S+ + +S +S M+ SAS
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472
Query: 131 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 36
+SGS++GSS +SA+ + L+R + LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 158 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 33
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 146 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 21
V+R + SGS+ G S SA A S SLA + P+ A
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERA 164
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 3.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -1
Query: 198 WHFELINVSDGVRLVRVGAAHASVRQ 121
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 125 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 21
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 253 SYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKYP 363
S+K +V PL TQL ++ + ITD++ + T+ +P
Sbjct: 1204 SFKRVVTPLGTQLRKDILNDSITDME-NTSSFTASFP 1239
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 76 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIV 219
RG+ +AL ++ A++ A R + P +GD+ L V + DIV
Sbjct: 455 RGWLLVALLEIIHALMLAAFCRDKGFEVPSDLGDI-TLYVQERMVDIV 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,001
Number of Sequences: 5004
Number of extensions: 28425
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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