Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P12
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 33 0.018
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 32 0.041
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.51
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 2.7
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 26 3.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 3.6
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 3.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.6
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 6.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 8.3
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 25 8.3
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 8.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.3
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 33.5 bits (73), Expect = 0.018
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 260 LRKRIAEVSTQLQECSKQQTTCMEESLTLLEPRDSHVRKINEMDKQKTKLLDELTDYETN 439
L I ++ ++ EC + T+ E +++K+N+ + K++LL T +T
Sbjct: 381 LNDYITKLQNEIDECRRNLLWAESSCETIREENQKNIKKLNDAESLKSRLLQSRTQMQTE 440
Query: 440 L 442
L
Sbjct: 441 L 441
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 32.3 bits (70), Expect = 0.041
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +2
Query: 257 ELRKRIAEVSTQLQECSKQQTTCMEESLTLLEPRDSHVRKINEMDKQKTKLLDELTDYET 436
E+++R T +Q KQ+ + TLL + K+ +++ +LL E +
Sbjct: 1045 EIQERYNGSITTVQTLKKQKEFANQYDSTLLAQAQEKLEKLKVEVERRRRLLSEKEERRK 1104
Query: 437 NLSKSDVQVTNTRVDVEL 490
L+ QVTN+ D+EL
Sbjct: 1105 ELAIKIEQVTNSCSDLEL 1122
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.7 bits (61), Expect = 0.51
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 263 RKRIAEVSTQLQECSKQQTTCMEESLTLLEPRDSHVRKINEMDKQKTKLLD 415
+ ++ ++ QLQE + T ++ TLL + RK++E+ +Q K D
Sbjct: 1824 QSQLLSLTAQLQEVREANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFD 1874
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 251 ETELRKRIAEVSTQLQECSKQQTTCMEESLTLLEPRDSHVRKINEMDKQKTKLLDE 418
+ +L+KR AE+ E KQQ + E L+E +S N + ++ LD+
Sbjct: 823 DKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDK 878
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 3.6
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 272 IAEVSTQLQECSKQQTTCMEESLTLLEPR-DSHVRKINEMDKQKTKLLDELTDYETNLSK 448
++ TQL++C K+Q ++SL LE + + + K +++K E ++ T L +
Sbjct: 484 VSRAKTQLEKC-KKQAKSQQKSLPYLEEQYEKYRAKAADLEK-------EFSESTTLLKR 535
Query: 449 SDVQVTNTRVD 481
+T +RVD
Sbjct: 536 DLSSLTTSRVD 546
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 272 IAEVSTQLQECSKQQTTCMEESLTLLEPRDSHVRKINEMDKQKTKLLDELT-DYETNLSK 448
I E+ TQ ++ K +T +++ + L R+ +++ E K K L E+ +YET + +
Sbjct: 317 INEIQTQNRDL-KLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKE 375
Query: 449 SDVQVTN 469
+ ++ N
Sbjct: 376 ARQKLNN 382
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 317 FVALNTLVIVYSLLRFFSVILFPNSNYLEVKVLTKCKQRK*CTSAND 177
F+A+N + + L+ F +IL + VK+ CK K +S D
Sbjct: 689 FMAINAQMQTFLLVFFTDIILGVKDDLQLVKIFENCKAEKNLSSKVD 735
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 181 LADVHYFRCLHFVSTFTSK*LEFG---NRITEKNRRSEYTITRVFKATNNL 324
L YF CLHF+ + L FG N+++++ R E ++ + + +
Sbjct: 3079 LGKTSYFSCLHFIRFLNTFCLIFGRDANKLSKEKSRIENGFKKIKETSQGI 3129
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 362 SHVRKINEMDKQKTKLLDELTDYETNLSKSD 454
S V+KINE +K K +DE + N S+ D
Sbjct: 375 SQVQKINEKEKDKFYEIDEQSILTLNNSEMD 405
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 166 RKHASLADVHYFRCLHFVSTFTSK*LEFGNRITEKNRRSEYTITRVFKA 312
RK + +C+H V F +E NR+ SE T+++KA
Sbjct: 502 RKCTECGITAHAQCVHLVPDFCGMSMEMANRVI-----SEIRTTKIYKA 545
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 326 MEESLTLLEPRDSHVRKINEMDKQKTKLLDELTDYETNLSKSDVQVTNT 472
M+ T +E ++ + + E++ +TKL +YET L++ VT T
Sbjct: 134 MQALQTQVEASTNNAKAVEELETLRTKLETRDKEYET-LAEKYAAVTKT 181
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 24.6 bits (51), Expect = 8.3
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +2
Query: 161 GIENMRRWPMYIIFAAC---IXXXXXXXXXXXXETELRKRIAEVSTQLQECSKQQTTCME 331
G+ N R+ ++ IF I T++RK +VS LQE T
Sbjct: 569 GLANARKSALHEIFVKINLKIDDFLGLAEYDWTTTQVRK---DVSGYLQEMVTYLQTMYL 625
Query: 332 ESLTLLEPRDSHVRKINEMDKQKTKLLDELTD 427
ESL L D + +D T ++D L+D
Sbjct: 626 ESLAGLPKHDKSYVYLETLDHLCTAMVDLLSD 657
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 8.3
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +2
Query: 254 TELRKRIAEVSTQLQECSKQQTTCMEESLTLLEPRDSHVRKINEMDKQKTKLLDELTDYE 433
++++K +++ + +E TL + +DS + +E+ + + LLD L E
Sbjct: 1182 SDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKDSLSTQYSEVCQDRDDLLDSLKGCE 1241
Query: 434 TNLSKSDVQV----TNTRVDV 484
+ +K V + T + +DV
Sbjct: 1242 ESFNKYAVSLRELCTKSEIDV 1262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,900
Number of Sequences: 5004
Number of extensions: 29245
Number of successful extensions: 119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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