Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P12
         (496 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   1.9  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   7.6  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/85 (17%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
 Frame = +2

Query: 266  KRIAEVSTQLQECSKQQTTCMEESLTLLEPRDSHVRKINEMDKQKTKLLD--------EL 421
            +++  +  ++ EC +   +   ++  + +  D +  +INE+   K K+L         ++
Sbjct: 850  EKVRALEAKVAECKQAFDSSSTKADAMQKNVDRYTEQINEITNSKVKVLQTKINGLGKQI 909

Query: 422  TDYETNLSKSDVQVTNTRVDVELCK 496
                 N+SK  V++  +  +V+  K
Sbjct: 910  DKLSANISKLTVEIKTSERNVQKSK 934


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 303 VQSNKQLAWKNLSRYLNQEIAMSEK*TKW 389
           V+   ++AWK  +R++  E  + E   +W
Sbjct: 115 VKEGDEMAWKETARWVKFEEDVEEGGNRW 143


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,101
Number of Sequences: 2352
Number of extensions: 7545
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43977336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)