Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P12
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -3

Query: 71  NFILPDTDHSY 39
           N+++PD++H Y
Sbjct: 538 NYVVPDSEHGY 548


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 377 INEMDKQKTKLLDELTDYETNLSKSDVQ 460
           IN M +   +LLDE +   T+LSK D +
Sbjct: 225 INHMFED-ARLLDEPSANRTDLSKDDYE 251


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 344 LLEPRDSHVRKINEMDKQKTKLLDELTDYETNLSKSDVQVTN 469
           LL P      K+N  +K+K  L + L  Y+  +  S    T+
Sbjct: 15  LLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATD 56


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 344 LLEPRDSHVRKINEMDKQKTKLLDELTDYETNLSKSDVQVTN 469
           LL P      K+N  +K+K  L + L  Y+  +  S    T+
Sbjct: 15  LLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATD 56


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 144 IYYNQYQLEQQKILVPI 94
           +YYN   +EQ  + VPI
Sbjct: 334 LYYNIINIEQIPVPVPI 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,419
Number of Sequences: 438
Number of extensions: 2057
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)