Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P11
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    28   1.0  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   1.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   3.2  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   4.2  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    26   4.2  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   9.7  

>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 205 STRCNGLLPLWGPHVPESAFVSCLARHTTYIQ 300
           S   +  + LW PHV  ++ +S +  HT Y++
Sbjct: 96  SCSSDSTVKLWKPHVLNASCLSTIGEHTDYVK 127


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 209 LVATVYCRCGGRMCPSPRSSVAWLGTLLTYRNA 307
           ++A  +C   G   P P   VA+ G LL +RNA
Sbjct: 362 IMAWAWCLPAGFGSPIPYFYVAYFGVLLVHRNA 394


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 422 ESGPPPPVSSWNVRPR 375
           ES PPPP+SS +  PR
Sbjct: 417 ESPPPPPISSSSTTPR 432


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 208 TRCNGLLPLWGPHVPESAF 264
           T    +L  WGPHVP   F
Sbjct: 140 TSLTSILQYWGPHVPSYGF 158


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 275 WLGTLLTYRNALATAISGTRARCTTSSCY 361
           WL  LL   + + TAI   + +C+ +S Y
Sbjct: 225 WLANLLKANDEIVTAIDAFKEKCSENSDY 253


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 205 MHFAKRHSPTHLV 167
           +HF  RHSP HL+
Sbjct: 723 LHFFNRHSPFHLI 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,211
Number of Sequences: 5004
Number of extensions: 30536
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)