Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P11
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 100 9e-22
01_06_0208 - 27540077-27540992,27541310-27541497 31 0.46
03_02_0902 + 12278770-12281448 30 1.4
01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864 30 1.4
09_04_0093 - 14550806-14552452 29 1.8
05_07_0351 + 29468247-29469851 29 1.8
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558 29 2.4
04_03_0432 - 15861997-15862096,15862449-15862519,15862612-158627... 29 3.2
07_01_0860 - 7142913-7144895 28 5.6
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 28 5.6
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 28 5.6
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 28 5.6
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 27 7.5
09_02_0236 - 6131072-6131639,6132047-6132180 27 7.5
08_01_0955 + 9478018-9478773 27 7.5
06_03_0305 + 19388745-19388963,19389069-19389209,19389799-193898... 27 7.5
04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054 27 7.5
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265... 27 7.5
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 27 7.5
01_06_0121 + 26646288-26647025,26648466-26648494,26649387-266494... 27 7.5
01_01_0815 + 6352634-6352910,6353005-6353220,6353355-6353506,635... 27 7.5
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 27 9.9
11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858 27 9.9
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 100 bits (239), Expect = 9e-22
Identities = 62/183 (33%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Frame = +1
Query: 10 QPTKVLGIYTFTKRCPVEEYEVRA-RKTLGYTTVSHYNIVHVECHMAAVR----LARARD 174
+PT +LG+Y F+KR + + R YTTVSH+NI+H +CH A R L +
Sbjct: 4710 RPTDMLGVYAFSKRVNLGATSSGSGRGDCVYTTVSHFNIIHYQCHQEAKRADAALKNPKK 4769
Query: 175 EWESAALQNASTRCNGLLPLWGPHVPESAFVSCLARHTTYIQECTGHRDIGH-TCTXXXX 351
EW+ A L+N T CN + PL GP VP + CL ++ + G D
Sbjct: 4770 EWDGATLRNNETLCNCIFPLRGPSVPPGQYTRCLDQYWDQLNS-LGRADGSRLRLLTYDI 4828
Query: 352 XXXXXRFARGRTFHDDTGGGGPLSNMQLVPAVMHMALYVIITSRVGAREV--SALEAYLG 525
RFA G +F D GGG SN + +P ++ MA +++ S R V A+ +YL
Sbjct: 4829 VLMLARFATGASFSTDCKGGGRESNSRFLPFMIQMASHLVDGSANQQRHVMAKAVTSYLS 4888
Query: 526 WAP 534
+P
Sbjct: 4889 SSP 4891
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 31.5 bits (68), Expect = 0.46
Identities = 28/94 (29%), Positives = 33/94 (35%)
Frame = +1
Query: 145 AAVRLARARDEWESAALQNASTRCNGLLPLWGPHVPESAFVSCLARHTTYIQECTGHRDI 324
+ VRLARAR AA RC G P P VS AR R +
Sbjct: 76 SVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGARAARRRRQRRV 135
Query: 325 GHTCTXXXXXXXXXRFARGRTFHDDTGGGGPLSN 426
GH R+A GGGG L++
Sbjct: 136 GH-AEVAGWRRDQRRWAAWVAVGGRRGGGGALAS 168
>03_02_0902 + 12278770-12281448
Length = 892
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 299 CM*VVCRARQLTNADSGTCGPHSGSRPL 216
C V+C+ RQ DSG HSG PL
Sbjct: 468 CFFVICKRRQRAGKDSGMSDGHSGWLPL 495
>01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864
Length = 273
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 413 PPPPVSSWNVRPRAKRSNSNLRSCSVHVCP 324
PPPPVS + KR + C+ +CP
Sbjct: 100 PPPPVSDCTINVCPKRKFGLVSDCTTEICP 129
>09_04_0093 - 14550806-14552452
Length = 548
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 75 ARAQDARLHDRLALQHRARRVPHGGGQARARTR 173
+RA RL+ L QHR RR+P G G A A R
Sbjct: 32 SRALQQRLY--LLAQHRRRRIPPGDGDASAARR 62
>05_07_0351 + 29468247-29469851
Length = 534
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 154 RLARARDEWESAALQNASTRCNGLLPLWGPHVPES 258
RL +E E + LP+W PHVPES
Sbjct: 26 RLQHEEEEEEEEVQDQEGGSSSFTLPVWAPHVPES 60
>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
Length = 852
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = -3
Query: 527 QPRYASSADTSRAPTLLVMITYSAMCMTAGTSCMLESGPPPPVSSWNVRPRAKRSNSNLR 348
Q R S+AD S + +M + + + T C ++SG PP + + + N++L
Sbjct: 672 QIRSPSAADGSNGFDMSMMYSTYPRLLESLTICGIKSGLPPWIEHLHQLTKVTLHNTSLT 731
Query: 347 SCSVHV 330
++HV
Sbjct: 732 ESAIHV 737
>04_03_0432 -
15861997-15862096,15862449-15862519,15862612-15862774,
15865311-15865535,15866156-15866403,15866489-15866618,
15866716-15866975
Length = 398
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 27 GYIHVHEALPGGGVRGARAQDARLHD--RLALQHRARRVPHGG 149
G HV +LP GG GA A+ R HD R A +P GG
Sbjct: 38 GVFHVRRSLPAGGA-GAAAEAYRAHDGSRRGRLLAAADIPLGG 79
>07_01_0860 - 7142913-7144895
Length = 660
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = -3
Query: 515 ASSADTSRAPTLLVMITYSAMCM--------TAGTSCMLESGPPPPVSSWNVRPRAKRSN 360
A+ A SRAP L A+CM + GTS ++ S PPPP S S+
Sbjct: 199 ATVAVWSRAPPPLERFRAYALCMLQVLENVNSLGTSDLVPSPPPPPASPTTASRPLPSSS 258
Query: 359 SNLRSCSVHV 330
S + ++ V
Sbjct: 259 SRRNTVAIAV 268
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 431 CMLESGPPPPVSSWNVRPRAKRSNSNLRSCSVHVCPISRWP 309
C S PPPP+ + K + SNL C+ CP+ P
Sbjct: 27 CAKRSAPPPPLLA------GKTTRSNLVGCNFDFCPLKLPP 61
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 512 SSADTSRAPTLLVMITYSAMCMTAGTSCMLESGPPPPVSSWNV--RPRAKRSNSNLRS 345
+S SR P L + I + GTS + P P + + RP + R+ S+L+S
Sbjct: 27 ASGHNSRRPNLSLQIPARTLDNQIGTSARINISPSPSSTRAGLPPRPNSTRTKSSLKS 84
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 208 TRCNGLLPLWGPHVPESAFVSCLARH 285
T+ N LP G HVP++A + C +H
Sbjct: 556 TQANASLPCPGQHVPDNASLPCPEQH 581
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 485 WGPVKCPRWRRTWAGPRC 538
W V+ P + WAGPRC
Sbjct: 389 WVAVRAPAYVTCWAGPRC 406
>09_02_0236 - 6131072-6131639,6132047-6132180
Length = 233
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 54 PGGGVRGARAQDARLHDRLALQHRARRVPHGGGQARARTR 173
P G A+ R H HR R+V GGG R TR
Sbjct: 142 PEGAFAAGSARRCRRHCHRRRIHRRRKVRGGGGSRRRWTR 181
>08_01_0955 + 9478018-9478773
Length = 251
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 21 GAGYIHVHEALPGGGVRGARAQDARLHDRL-----ALQHRARRVPHGGGQARAR 167
G +H HE + G RG D DR+ LQ RA GGG ++++
Sbjct: 162 GCSKMHHHEIMAAGSCRGGADADGEGADRVNRVIARLQERAGGGGGGGGSSKSK 215
>06_03_0305 +
19388745-19388963,19389069-19389209,19389799-19389836,
19390161-19390227,19392057-19392467
Length = 291
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 413 PPPPVSSWNVRPRAKRSNSNLRSCSVHVCP 324
PP P SSW+ R +R + + S+H+ P
Sbjct: 34 PPLPSSSWSPPSRRRRRRAVAAASSLHLAP 63
>04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054
Length = 242
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 33 IHVHEALPGGGVRGARAQDARLHDRLALQHRARRVPHGGGQARARTR 173
+ + A PGGG +G + + + R GGGQ R R R
Sbjct: 43 VELGSARPGGGTKGRNRGGTGRRREWSREKKVRTPIGGGGQRRRRLR 89
>02_03_0056 -
14525491-14525833,14525882-14526125,14526447-14526591,
14526757-14527121,14527323-14527722
Length = 498
Score = 27.5 bits (58), Expect = 7.5
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = -3
Query: 548 SSTRTGAQPRYASSADTSRAPTLLVMITYSAMCMT-AGTSCMLESGPPPPVSSWNVRPRA 372
SS+ T Q A A T AP +S T A S SG PP +S W++
Sbjct: 343 SSSSTPIQMYEAGWAPTGDAPGWTQAPRHSIGVSTWASASEDRSSGVPPSLSEWHLSSSR 402
Query: 371 KRSNSNLRSCSVHVCPISRW 312
N RS V P S W
Sbjct: 403 WGDNQPSRSSGVPPSP-SEW 421
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 401 VSSWNVRPRAKRSNSNLRSCSVHVCP 324
V++W+V+P + + S L S S +CP
Sbjct: 1684 VTAWDVQPEMQTTTSTLDSPSARMCP 1709
>01_06_0121 +
26646288-26647025,26648466-26648494,26649387-26649434,
26650398-26650558,26650945-26651268,26651703-26651854
Length = 483
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 60 GGVRGARAQDARLHDRLALQHRARRVPHGGG 152
GG R A A R+H LA + R RR+ GGG
Sbjct: 135 GGSRVAEACRERMHVVLAEEVRVRRLLQGGG 165
>01_01_0815 +
6352634-6352910,6353005-6353220,6353355-6353506,
6355713-6355989,6356064-6356090,6356736-6356998
Length = 403
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 215 ATVYCRCGGR-MCPSPRSSVAWLGTLLT 295
ATV C G +CP+P +S+ W G LT
Sbjct: 347 ATVACGLPGTSVCPTPNTSINWDGIHLT 374
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 238 GPHVPESAFVSCLARHTTYIQECTGHRDIGHTC 336
G +P SA LA+HT + EC+ + H C
Sbjct: 461 GGDLPYSA-TGLLAKHTPMVYECSSNCQCSHNC 492
>11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858
Length = 675
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 238 GPHVPESAFVSCLARHTTYIQECTGHRDIGHTC 336
G +P SA LA+HT + EC+ + H C
Sbjct: 446 GGDLPYSA-TGLLAKHTPMVYECSSNCQCSHNC 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,896
Number of Sequences: 37544
Number of extensions: 297059
Number of successful extensions: 1240
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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