Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P11
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-5|AAD47120.1| 814|Caenorhabditis elegans Hypothetical ... 60 1e-09
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 60 1e-09
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 60 1e-09
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical pr... 28 3.9
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 28 3.9
AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormo... 28 3.9
>AF003140-5|AAD47120.1| 814|Caenorhabditis elegans Hypothetical
protein C44E4.1b protein.
Length = 814
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = +1
Query: 100 TTVSHYNIVHVECHMAAVRLA--RARDEWESAALQNASTRCNGLLPLWGPHVPESAFVSC 273
+TVS +VH CH A+R RA DEW + L NA +CN + P+ V A++
Sbjct: 552 STVSMMVMVHFNCHKDAIRGGGGRAADEWTRSKLHNAGAKCNVITPISMGVVIGDAWIDA 611
Query: 274 LARHTTYIQECTG--HRDIGHTCTXXXXXXXXXRFARGRTFHDDTGGGGPLSNMQLVPAV 447
L R + +G H + RF R+F + + GGG SNMQ + A+
Sbjct: 612 LHRFENDVGRVSGLAHGVVNRNFVFVDICNLIDRFIYKRSFSNQSEGGGRESNMQYL-AI 670
Query: 448 MHM 456
+H+
Sbjct: 671 LHL 673
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = +1
Query: 100 TTVSHYNIVHVECHMAAVRLA--RARDEWESAALQNASTRCNGLLPLWGPHVPESAFVSC 273
+TVS +VH CH A+R RA DEW + L NA +CN + P+ V A++
Sbjct: 2450 STVSMMVMVHFNCHKDAIRGGGGRAADEWTRSKLHNAGAKCNVITPISMGVVIGDAWIDA 2509
Query: 274 LARHTTYIQECTG--HRDIGHTCTXXXXXXXXXRFARGRTFHDDTGGGGPLSNMQLVPAV 447
L R + +G H + RF R+F + + GGG SNMQ + A+
Sbjct: 2510 LHRFENDVGRVSGLAHGVVNRNFVFVDICNLIDRFIYKRSFSNQSEGGGRESNMQYL-AI 2568
Query: 448 MHM 456
+H+
Sbjct: 2569 LHL 2571
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = +1
Query: 100 TTVSHYNIVHVECHMAAVRLA--RARDEWESAALQNASTRCNGLLPLWGPHVPESAFVSC 273
+TVS +VH CH A+R RA DEW + L NA +CN + P+ V A++
Sbjct: 2448 STVSMMVMVHFNCHKDAIRGGGGRAADEWTRSKLHNAGAKCNVITPISMGVVIGDAWIDA 2507
Query: 274 LARHTTYIQECTG--HRDIGHTCTXXXXXXXXXRFARGRTFHDDTGGGGPLSNMQLVPAV 447
L R + +G H + RF R+F + + GGG SNMQ + A+
Sbjct: 2508 LHRFENDVGRVSGLAHGVVNRNFVFVDICNLIDRFIYKRSFSNQSEGGGRESNMQYL-AI 2566
Query: 448 MHM 456
+H+
Sbjct: 2567 LHL 2569
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
protein ZC84.1 protein.
Length = 1556
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 344 CSVHVCPISRWPV--HSCM*VVCRARQLTNADSGTCGP 237
CSV CP P+ HS M +VC A+Q + DS C P
Sbjct: 682 CSVGGCPNGGTPLRDHSGMVMVCGAQQTSCPDSHECIP 719
>Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical
protein T11G6.2b protein.
Length = 495
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 285 HYLHTGMHWPPRY 323
+YLH G+HWP Y
Sbjct: 291 YYLHAGLHWPESY 303
>Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical
protein T11G6.2a protein.
Length = 502
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 285 HYLHTGMHWPPRY 323
+YLH G+HWP Y
Sbjct: 298 YYLHAGLHWPESY 310
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 449 MTAGTSCMLESGPPPPV--SSWNVRPRAKRSNSNL 351
MT G C +E PPPP+ S + P A + S+L
Sbjct: 1 MTLGDPCSVEQPPPPPIDFSRSLIAPTAIKQESHL 35
>AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 41 protein.
Length = 160
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 449 MTAGTSCMLESGPPPPV--SSWNVRPRAKRSNSNL 351
MT G C +E PPPP+ S + P A + S+L
Sbjct: 43 MTLGDPCSVEQPPPPPIDFSRSLIAPTAIKQESHL 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,958
Number of Sequences: 27780
Number of extensions: 206516
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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