Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P11
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.072
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.88 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 49   RCPVEEYEVRARKTLGYTTVSHYNIVHVECHMAAVRL 159
            R    EY      T G+ TV+H  IVH   H   + L
Sbjct: 1338 RTDAGEYSCYVENTFGHDTVTHQLIVHAPPHSPQITL 1374



 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 425  LESGPPPPVSSWNVRPRAKRSNSNLR 348
            L  G P P  +W VR    +S+  LR
Sbjct: 1299 LAVGVPAPEVTWKVRGAVLQSSDRLR 1324


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 524 PRYASSADTSRAPTLLVMITYSAMCMTAGTSCMLESGPPP-PVSSWNVRPRA 372
           P  +S  D+++   +  + T     + +G S    +GPPP P  +   R RA
Sbjct: 347 PPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRA 398


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 398 SSWNVRPRAKRSNSNLRSCSVHVCPISRWPVHSCM*VVCRARQ 270
           S+  +  R+ + +  L  C+      +RWP  S +     ARQ
Sbjct: 753 STTTITARSPQGSQGLLQCATSNYSTTRWPATSVITTTTGARQ 795


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 182 RVPLCKMHLLVATVYCRCGGRMCPSPRSSVAWLGTLLTYRNALAT 316
           +V LC   LL  TV+      + P    ++  LG  L +   L T
Sbjct: 280 KVSLCSSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVT 324


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 223 LLPLWGPHVPESAFVSCLARHTTYIQE 303
           ++ +WG  VPE    SC   + T   E
Sbjct: 181 VMGVWGRFVPEGFLTSCSFDYLTDTNE 207


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 543 HPHRGPAQVRLQRGHFTGP 487
           HPHRG +       H  GP
Sbjct: 327 HPHRGSSPHHQHGNHTMGP 345


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 235 WGPHVPESAFVSC 273
           WG + PE+  VSC
Sbjct: 37  WGSYGPEAGNVSC 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,522
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)