Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P10
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 252 3e-68
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 185 3e-48
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 164 6e-42
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 145 4e-36
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 144 5e-36
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 133 2e-32
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 120 1e-28
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 118 5e-28
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 113 2e-26
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 108 6e-25
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 105 3e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 105 3e-24
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 101 9e-23
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 100 1e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 99 2e-22
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 95 8e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 94 1e-20
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 94 1e-20
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 89 4e-19
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 85 5e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 80 2e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 8e-13
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 68 8e-13
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 39 4e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 39 4e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.14
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.32
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.43
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.57
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 1.3
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 3.0
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 4.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 4.0
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 26 4.0
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 5.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 252 bits (616), Expect = 3e-68
Identities = 116/171 (67%), Positives = 139/171 (81%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
FEEA FP+YV + +K +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVH
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 195 INNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 374
IN QP + GDGPI LVLAPTRELA QIQQ ++FG SS +RNTCV+GG P+ Q RDL
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 375 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
RGVEI IATPGRL+D L+ TNL+R TYLVLDEADRMLDMG EPQIR I+
Sbjct: 244 RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 294
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 185 bits (451), Expect = 3e-48
Identities = 87/161 (54%), Positives = 114/161 (70%), Gaps = 3/161 (1%)
Frame = +3
Query: 54 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 233
I S+GY+ PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+GP
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
Query: 234 IALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 413
IA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+
Sbjct: 493 IAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRM 552
Query: 414 IDFLEKG---TTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
ID L TNL RCTYLVLDEADRM D+G EPQ+ II
Sbjct: 553 IDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRII 593
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 164 bits (399), Expect = 6e-42
Identities = 80/175 (45%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Frame = +3
Query: 12 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 191
++EEA P + + +K + YK+P+ IQ P+ + K+L+G+A+TGSGKT A+I+P I+
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 192 HINNQPPIRRGD---GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA 362
I+ PP+ + GP A+VLAPTRELAQQIQ ++F R V GG EQ+
Sbjct: 310 AISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS 369
Query: 363 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
+ +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMG E + I+
Sbjct: 370 FQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKIL 424
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 145 bits (351), Expect = 4e-36
Identities = 77/176 (43%), Positives = 110/176 (62%), Gaps = 13/176 (7%)
Frame = +3
Query: 39 YVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI-VHINNQP-- 209
++ Q IK GY PTP+Q PI SG++L+ AQTGSGKT ++ P + + + P
Sbjct: 179 HLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAA 238
Query: 210 -PIRRGDG---------PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQ 359
P+ + G P L+LAPTREL QI + + +F S+VR V+GGA R Q
Sbjct: 239 VPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298
Query: 360 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
R +++G +++ ATPGRL+D +++G +L +LVLDEADRMLDMG EPQIR+I+
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIV 354
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 144 bits (350), Expect = 5e-36
Identities = 74/171 (43%), Positives = 111/171 (64%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
F+E + + + +K+ YK+PTPIQA WP ++G+++VG+A+TGSGKT+A+ +PA+ +
Sbjct: 169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 195 INNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 374
+N + P LV++PTRELA Q + + + ++ V+GGAPK EQAR
Sbjct: 227 LNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AA 283
Query: 375 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
+ ++I TPGRL+D + G+ + + YLVLDEADRMLD G E IRNII
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNII 334
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 133 bits (321), Expect = 2e-32
Identities = 74/174 (42%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
F+E D +C+A + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 195 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDL 371
+ NN P A+VLAPTRELA QI + G S VR+ + GG QA L
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 372 ERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
+ +++ TPGRL+D LE KG +L+ YL++DEADR+LDM P I I+
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKG-FSLKNLKYLIMDEADRLLDMDFGPIIDKIL 214
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 120 bits (289), Expect = 1e-28
Identities = 71/177 (40%), Positives = 110/177 (62%), Gaps = 4/177 (2%)
Frame = +3
Query: 9 EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 188
E F + + + +AIK MG++ T IQ + P ++G++++G A+TGSGKTLA+++P I
Sbjct: 89 EKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
Query: 189 --VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA 362
++ P R G G I +++PTRELA QI VA E + V GGA +R +A
Sbjct: 149 EMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEA 205
Query: 363 RDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++G E ++R I+
Sbjct: 206 DKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIM 261
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 118 bits (284), Expect = 5e-28
Identities = 61/172 (35%), Positives = 96/172 (55%)
Frame = +3
Query: 12 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 191
+F+ + +AI G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 192 HINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDL 371
H+ + AL+L+P RELA Q +V +F + +R+ + GG EQ L
Sbjct: 130 HLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLL 186
Query: 372 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
+IV+ATPGR + + L Y+V DEADR+ +MG Q+ I+
Sbjct: 187 SGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEIL 238
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 113 bits (271), Expect = 2e-26
Identities = 61/176 (34%), Positives = 100/176 (56%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 TREHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 182
T F+ N + + + ++G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P
Sbjct: 257 THSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVP 316
Query: 183 AIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA 362
+ + +P ++ L+L PTRELA Q VA++ + + + GG + Q
Sbjct: 317 ILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQE 374
Query: 363 RDLERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
++L + +IVIATPGR ID + ++ +V+DEADRML+ G ++ II
Sbjct: 375 QELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEII 430
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 108 bits (259), Expect = 6e-25
Identities = 57/171 (33%), Positives = 91/171 (53%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
FE+ + I G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 195 INNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 374
++ + + L+L PTRELA Q QV G V+ GG R+ L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 375 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
V IV+ TPGR++D KG + CT V+DEAD++L P I ++
Sbjct: 161 DTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLL 211
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 105 bits (253), Expect = 3e-24
Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
Frame = +3
Query: 63 MGYKDPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRGDG 230
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 231 PIALVLAPTRELAQQIQQVASEFGN---SSYVRNTCVFGGAPKREQARDLERGVEIVIAT 401
A+++APTREL QQI VA++ N S ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 402 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
PGRL D LE ++ + ++VLDE DR++DMG E + I+
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKIL 319
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 105 bits (253), Expect = 3e-24
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
Frame = +3
Query: 3 TREHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 182
TR+ F + ++ +K++ +PT IQ + G+N +G A+TGSGKT A+ LP
Sbjct: 5 TRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALP 64
Query: 183 AIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA 362
I + P G AL+L PTRELA QI + + G + +++ + GG Q+
Sbjct: 65 IIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQS 119
Query: 363 RDLERGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRML 491
DL + +V+ATPGRL D + E+ L+R +LV+DEADR+L
Sbjct: 120 IDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL 166
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 101 bits (241), Expect = 9e-23
Identities = 65/181 (35%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
F+ N ++ A+ + G+K TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 195 INNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF---------GNSSYVRNTCVFG-GA 344
+ + G G AL++APTRELA QI V E G V + + G G
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 345 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNI 524
+ A E+ +VI TPGRL + L + + L+LDEAD ++DMG + +++I
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSI 178
Query: 525 I 527
I
Sbjct: 179 I 179
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 100 bits (240), Expect = 1e-22
Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 TREHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 182
T +HF E A+K+ + T IQ Q P A+ G++++G A+TGSGKTLA+I+P
Sbjct: 37 TVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVP 96
Query: 183 AIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA 362
I ++ + DG ALV++PTRELA Q + + G + GG +E+
Sbjct: 97 LIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 363 RDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGSEPQIRNII 527
L R + I++ TPGRL+ +++ + L+LDEADR+LDMG + I+
Sbjct: 156 ERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIV 210
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 99 bits (238), Expect = 2e-22
Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 3/173 (1%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
F + N + +AI ++ PT +Q++ P+A+ GK+LV A+TGSGKT AY++P +
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 195 INNQPPIRRGD-GPIALVLAPTRELAQQIQQVASEFGN--SSYVRNTCVFGGAPKREQAR 365
+ Q I G AL+L PTRELAQQ+ V + S ++R V + Q
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 366 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNI 524
L +IVIATP R + + G L + +LV+DEAD ML G ++ +
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTL 188
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 94.7 bits (225), Expect = 8e-21
Identities = 55/170 (32%), Positives = 91/170 (53%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
F++ N + + I + G++ P+ IQ + + ++++ AQ+G+GKT + + +
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 195 INNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 374
I+ +++ AL+LAPTRELAQQIQ+V G+ V GG R+ L+
Sbjct: 81 IDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQ 135
Query: 375 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNI 524
GV +V+ TPGR+ D +++ VLDEAD ML G + QI +I
Sbjct: 136 AGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDI 185
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 94.3 bits (224), Expect = 1e-20
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Frame = +3
Query: 51 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 230
++ G+ P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D
Sbjct: 136 SLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDA 190
Query: 231 PI--ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 404
ALV+APTRELA QI Q S +R + GG ++Q R L + +V+ATP
Sbjct: 191 KYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
Query: 405 GRLIDFLEKG--TTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
GRL + + T N ++ LVLDEADR+L ++ ++
Sbjct: 251 GRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLL 293
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 94.3 bits (224), Expect = 1e-20
Identities = 54/170 (31%), Positives = 90/170 (52%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
FEE N + + + I + GY+ P+ +Q++ G++++ AQ+G+GKT + + +
Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82
Query: 195 INNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 374
I+ +R AL+L+PTRELA QIQ V G+ V+ GG + L+
Sbjct: 83 IDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD 137
Query: 375 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNI 524
G +V TPGR+ D + + + L+LDEAD +L+ G + QI +I
Sbjct: 138 YGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDI 187
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 89.0 bits (211), Expect = 4e-19
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Frame = +3
Query: 15 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYILPAI 188
FEE + + I SM ++ P+ IQ + P+ +S +N++G +Q+G+GKT A+ L +
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 189 VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARD 368
++ P P A+ LAP+RELA+QI V +E G + V+ FG K +
Sbjct: 176 SRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKG 226
Query: 369 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 494
+ +IVI TPG ++D +++ + + VLDEAD MLD
Sbjct: 227 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 85.4 bits (202), Expect = 5e-18
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 3/172 (1%)
Frame = +3
Query: 18 EEANFPDYVCQAIKSMGYKDPTPIQAQGW-PIAMSGKNLVGVAQTGSGKTLAYILPAIVH 194
E A+ ++ G++ TP+Q + + + +N V A+TG+GKTLA++L A
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKD 100
Query: 195 INNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 374
+ P +++L+PTRELA QI + A + + +R + GG K + +
Sbjct: 101 VLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIR 160
Query: 375 RG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGSEPQIRNI 524
RG ++IATPGRL D L+ T +LDEADR++DMG I NI
Sbjct: 161 RGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNI 212
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 80.2 bits (189), Expect = 2e-16
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Frame = +3
Query: 30 FPDYV-CQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 206
FP+ + C+ +K + T IQ P S ++L+ A TGSGKT+AY+ P + +
Sbjct: 52 FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLH 111
Query: 207 PPIRRGDGPIALVLAPTRELAQQIQQVASE--FGNSSYVRNTCVFGGAPKREQARDLERG 380
P G A+++APTREL +QI + A + FG S + +E+A L
Sbjct: 112 VP----GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSK-SNEKIQEKAPKLREK 166
Query: 381 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGSEPQIRNII 527
++ I TP RL+ ++ G + ++ + V+DEADR+ + G Q +I+
Sbjct: 167 YDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHIL 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.1 bits (159), Expect = 8e-13
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Frame = +3
Query: 48 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 227
+AI G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 228 GPIA-LVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKR---EQARDLERGVEIV 392
G ++ LVL TRELA QI+ + F VR +GG + E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 393 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 494
+ATPGRL + + + + VLDE D++L+
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 68.1 bits (159), Expect = 8e-13
Identities = 42/149 (28%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Frame = +3
Query: 105 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 278
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
Query: 279 QQVASEFGNSSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT- 440
+ + + + ++ G R + L E ++++++TPGRL+D + +
Sbjct: 222 AKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESF 281
Query: 441 NLQRCTYLVLDEADRMLDMGSEPQIRNII 527
+LQ Y+V+DEADR+LD + + ++
Sbjct: 282 SLQHLRYMVIDEADRLLDQSFQDWVDTVM 310
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 39.1 bits (87), Expect = 4e-04
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +3
Query: 126 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGN 305
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKGL 1266
Query: 306 SSYVRNTCVFGGA--PKREQARDL-ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 476
N F Q DL E + G + F E T L R +V+DE
Sbjct: 1267 LVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSG--LRFFESLAT-LGRLARVVIDE 1323
Query: 477 ADRMLDMGS 503
A +L G+
Sbjct: 1324 AHLLLTSGA 1332
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 39.1 bits (87), Expect = 4e-04
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +3
Query: 126 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGN 305
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKGL 1266
Query: 306 SSYVRNTCVFGGA--PKREQARDL-ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 476
N F Q DL E + G + F E T L R +V+DE
Sbjct: 1267 LVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSG--LRFFESLAT-LGRLARVVIDE 1323
Query: 477 ADRMLDMGS 503
A +L G+
Sbjct: 1324 AHLLLTSGA 1332
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 114 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 272
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 363 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 464
R L++G+E VI TP RL+ ++ + NLQR +++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHM 168
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.43
Identities = 27/121 (22%), Positives = 52/121 (42%)
Frame = +3
Query: 123 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 302
+N++ TG GKT + A+V +N +R + +APT+ L Q + +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQQMEACYKIT 140
Query: 303 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 482
+ + G P + + + TP +++ ++ G + R + LV+DEA
Sbjct: 141 GIPKSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAH 199
Query: 483 R 485
R
Sbjct: 200 R 200
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 28.7 bits (61), Expect = 0.57
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 9 EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPA 185
E E + D +C+ + Y+ IQ+ +PIA + +N++ A TG+GKT +L
Sbjct: 256 EKLLEISSMDILCRKT-FLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAM 314
Query: 186 IVHINN 203
+ I+N
Sbjct: 315 LQTISN 320
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 288 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 455
A +FG+ S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 456 TYLVLDE 476
TY V E
Sbjct: 275 TYQVSGE 281
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 303 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 455
NS+YV+++C + K+ Q EIVIAT RL+ + T C
Sbjct: 16 NSNYVQSSCAASLSGKKAQ--------EIVIATESRLLIYKVDATDGRMNC 58
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 54 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 227
+ ++GY D P G P+ ++GK + V GK +L + + + P ++RGD
Sbjct: 280 VVAIGYGDGFPQVRNGCPVIINGKRVPTV-----GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 20 RGKLSRLCVSSNKKYGLQRSYPYT---GSRMANRYVREKLG 133
+ K++ +C+S + KY L P+T NR VR+ +G
Sbjct: 383 QSKVTSICLSKDSKYALTNLEPHTTFLWDLEENRIVRQYMG 423
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 23 GKLSRLCVSSNKKYGLQRSYPYTGSRMANRYVREKLGW 136
GK SR C + ++ GL R Y SR + R +G+
Sbjct: 15 GKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGF 52
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 231 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 374
PI ++ +P E+ ++V + Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,910
Number of Sequences: 5004
Number of extensions: 48778
Number of successful extensions: 189
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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