Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P09
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   7.0  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   7.0  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    25   9.2  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 274 IWVGTCIRCLCKVYHNLYK 218
           IW G C + +   Y NLYK
Sbjct: 271 IWAGKCPKTIRMFYSNLYK 289


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 280 LNIWVGTCIRCLCKVYHNL 224
           L IW  T + CLCK Y  L
Sbjct: 125 LQIWDITSLSCLCKFYTKL 143


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 416 NLCQRYCPASWPALTTKYSGLTFKANLYIANSRMV 520
           N  QR+     PALTT+  G+  K  L   + +M+
Sbjct: 51  NFLQRFFDDFKPALTTRGDGVALKRKLTSRHMQMI 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,139
Number of Sequences: 5004
Number of extensions: 42749
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)