Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P09
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0692 + 31276342-31276479,31277161-31277408,31277541-312777...    30   1.0  
01_02_0048 - 10626467-10627498,10628522-10628617                       28   5.3  
01_01_0101 - 766382-767487,767599-767756,767900-768615                 28   5.3  

>01_06_0692 +
           31276342-31276479,31277161-31277408,31277541-31277722,
           31278007-31278143,31278381-31278546,31278615-31278731,
           31279038-31279198,31279431-31279634
          Length = 450

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 117 YDRCHILP--KSDVFTSCRFLQPGGS*FRAPPPGSSFVPLV 1
           + R  ++P  K  V T+ R L+      RA PPGS+FVPL+
Sbjct: 133 FGRAIVMPNLKPPVTTTARALEYREEILRALPPGSNFVPLM 173


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 463 GCQSGPGGWTISLTQVLFRFSHKVKMACLELSCLFSYPYSMCYCCCFF 320
           GC SG G W +   + L     ++  +CL L       Y   YCCC F
Sbjct: 52  GCASGAGTWPLHHFRRLDGVHCRLCSSCLLLE------YRSFYCCCCF 93


>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 211 FGSYINCGRLYTGNEYMFLPI-CLKF*TSTSFDFLF 315
           + S++NC +    + +M++P+ CL   TS SF ++F
Sbjct: 134 WASFVNCSQEIRNSSWMYMPVACLS--TSRSFVYVF 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,831
Number of Sequences: 37544
Number of extensions: 264414
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)