Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P08
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114...    30   1.2  
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242...    29   1.6  
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939...    28   3.7  
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206...    28   4.9  
07_01_0659 + 4946937-4946990,4947579-4947698,4947820-4947918,494...    27   6.5  

>03_05_0742 +
           27310404-27310457,27311281-27311286,27311350-27311469,
           27311597-27311695,27311787-27311795,27311843-27311980,
           27312084-27312218,27312308-27312517,27312592-27312798,
           27312891-27313010,27313079-27313198,27313279-27313401,
           27313501-27313605,27313764-27313908,27314658-27315148,
           27315236-27315268,27315556-27315637,27315747-27315907,
           27316021-27316206,27316294-27316476,27316573-27316751,
           27317009-27317105
          Length = 1000

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 415 LKVGDDQNRRLGLGKDTFAVSAEGTRPQSYGEAVEALPVNNI 290
           L +G +  RRLG+G + +  SA     Q+  E+V ALPV+++
Sbjct: 534 LAIGKETGRRLGMGTNMYPSSA--LLGQNKDESVAALPVDDL 573


>12_02_1263 +
           27423411-27423464,27423985-27424104,27424200-27424298,
           27424405-27424542,27424647-27424706,27424865-27425044,
           27425132-27425338,27425415-27425534,27425609-27425728,
           27425819-27425941,27426074-27426178,27426379-27426523,
           27426967-27427131,27427228-27427466,27427553-27427585,
           27427894-27427975,27428100-27428260,27428422-27428607,
           27428700-27428882,27428969-27429147,27429386-27429482
          Length = 931

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 415 LKVGDDQNRRLGLGKDTFAVSAEGTRPQSYGEAVEALPVNNI 290
           L +G +  RRLG+G + +  SA     Q+  E++ ALPV+++
Sbjct: 494 LAIGKETGRRLGMGTNMYPSSA--LLGQNKDESIAALPVDDL 533


>04_04_1427 +
           33491847-33491888,33493504-33493623,33493740-33493976,
           33494754-33495638,33495733-33495837,33495920-33496064,
           33496146-33496310,33496391-33496629,33496724-33496756,
           33496840-33496921,33497017-33497177,33497282-33497455,
           33497549-33497731,33497832-33498019,33498155-33498251
          Length = 951

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 415 LKVGDDQNRRLGLGKDTFAVSAEGTRPQSYGEAVEALPVNNI 290
           L +G +  RRLG+G + +  SA     Q+   ++EALPV+ +
Sbjct: 515 LAIGKETGRRLGMGTNMYPSSA--LLGQNKDASLEALPVDEL 554


>01_02_0006 +
           10118766-10118775,10119383-10119526,10120534-10120659,
           10120885-10121003,10121355-10121609
          Length = 217

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 135 IYXDNITLGHSALKLQVLNISDQSFL 212
           I  DN+T+GHSA+ LQ   + D++F+
Sbjct: 86  IIGDNVTVGHSAV-LQGCTVEDEAFV 110


>07_01_0659 +
           4946937-4946990,4947579-4947698,4947820-4947918,
           4948038-4948175,4948268-4948402,4948501-4948609,
           4948735-4948976,4949061-4949180,4949272-4949391,
           4949477-4949599,4949708-4949812,4949896-4950040,
           4950337-4950501,4950621-4950859,4950939-4950971,
           4951082-4951163,4951314-4951474,4951566-4951751,
           4951877-4952059,4952166-4952347,4952461-4952557
          Length = 945

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 415 LKVGDDQNRRLGLGKDTFAVSAEGTRPQSYGEAVEALPVNNI 290
           L +G +  RRLG+G + +  SA     Q   E++ ALPV+ +
Sbjct: 507 LAIGKETARRLGMGTNMYPSSA--LLGQDKDESIVALPVDEL 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,327,390
Number of Sequences: 37544
Number of extensions: 194015
Number of successful extensions: 330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)