Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P06
         (84 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    44   4e-06
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    44   4e-06
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    44   4e-06
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    44   4e-06
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    44   4e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    26   0.58 
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    26   0.77 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   3.1  

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 41  QRLIFAGKQLEDGRTLSDYNI 61


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 41  QRLIFAGKQLEDGRTLSDYNI 61


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 41  QRLIFAGKQLEDGRTLSDYNI 61


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 41  QRLIFAGKQLEDGRTLSDYNI 61



 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 117 QRLIFAGKQLEDGRTLSDYNI 137



 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNI 213



 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNI 289



 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 345 QRLIFAGKQLEDGRTLSDYNI 365


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLIFAGKQL+DGRTLSDYNI
Sbjct: 41  QRLIFAGKQLEDGRTLSDYNI 61


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLI+AG+ LKD  +L  Y I
Sbjct: 44  QRLIYAGRVLKDEESLKTYKI 64


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 22  RRLIFAGKQLKDGRTLSDYNI 84
           +RLI+AGKQ+ D +    Y++
Sbjct: 41  QRLIYAGKQMADDKNAESYHL 61


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 37  AGKQLKDGRTLSDYNI 84
           AGK+LK  R L DY+I
Sbjct: 484 AGKRLKYSRNLDDYHI 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,393
Number of Sequences: 5004
Number of extensions: 1879
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 9
effective length of database: 2,317,442
effective search space used: 41713956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)