Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P06
(84 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 44 2e-05
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 44 2e-05
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 44 2e-05
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 44 2e-05
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 44 2e-05
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 32 0.048
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 25 5.5
U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched fami... 25 9.6
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 41 QRLIFAGKQLEDGRTLSDYNI 61
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 41 QRLIFAGKQLEDGRTLSDYNI 61
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 117 QRLIFAGKQLEDGRTLSDYNI 137
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNI 213
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNI 289
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 345 QRLIFAGKQLEDGRTLSDYNI 365
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNI 441
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 41 QRLIFAGKQLEDGRTLSDYNI 61
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 117 QRLIFAGKQLEDGRTLSDYNI 137
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNI 213
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNI 289
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 345 QRLIFAGKQLEDGRTLSDYNI 365
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNI 441
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 497 QRLIFAGKQLEDGRTLSDYNI 517
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 573 QRLIFAGKQLEDGRTLSDYNI 593
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 649 QRLIFAGKQLEDGRTLSDYNI 669
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 725 QRLIFAGKQLEDGRTLSDYNI 745
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 801 QRLIFAGKQLEDGRTLSDYNI 821
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 41 QRLIFAGKQLEDGRTLSDYNI 61
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 117 QRLIFAGKQLEDGRTLSDYNI 137
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNI 213
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNI 289
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 345 QRLIFAGKQLEDGRTLSDYNI 365
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNI 441
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 497 QRLIFAGKQLEDGRTLSDYNI 517
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 573 QRLIFAGKQLEDGRTLSDYNI 593
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 649 QRLIFAGKQLEDGRTLSDYNI 669
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 725 QRLIFAGKQLEDGRTLSDYNI 745
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 801 QRLIFAGKQLEDGRTLSDYNI 821
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQL+DGRTLSDYNI
Sbjct: 41 QRLIFAGKQLEDGRTLSDYNI 61
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 32.3 bits (70), Expect = 0.048
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +1
Query: 22 RRLIFAGKQLKDGRTLSDYNI 84
+RLIFAGKQ+ D +T +DY +
Sbjct: 41 QRLIFAGKQMNDDKTAADYKV 61
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 28 LIFAGKQLKDGRTLSDYNI 84
L F+GK+L+D ++ DYNI
Sbjct: 195 LSFSGKRLEDHCSIGDYNI 213
>U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched family
protein 2 protein.
Length = 936
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 4 RGARISRRLIFAGKQLKDGRTLSDYN 81
R AR+ + +F +K+ TLS YN
Sbjct: 587 RSARLVKNFVFGVDAIKETSTLSPYN 612
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,307
Number of Sequences: 27780
Number of extensions: 11670
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 12,740,198
effective HSP length: 9
effective length of database: 12,490,178
effective search space used: 224823204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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