Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P05
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 38 0.002
08_02_1407 + 26858677-26859153 33 0.087
01_04_0054 - 15456668-15459691 29 1.9
10_01_0252 + 2646074-2646430,2646476-2648158 28 2.5
05_04_0123 + 18210069-18213737 28 3.3
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 27 4.3
04_03_0407 - 15542495-15543247 27 4.3
03_06_0510 + 34423528-34424046,34424132-34425025 27 4.3
03_05_0909 + 28692446-28692826 27 5.7
05_07_0206 - 28405109-28406671 27 7.6
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 7.6
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 27 7.6
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216... 27 7.6
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 38.3 bits (85), Expect = 0.002
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Frame = +2
Query: 2 AAGIRHEGAADLSEEVTKRRAARYLPAESGVRPYSRLHAEGYKMLSELE----------- 148
A ++ A E++ +RR R + +S + PY A G +L E
Sbjct: 3995 AVKMKISSAIMAEEQLARRRLPRAIGGDSLLYPYDDHKAAGQAILQLAEYATFLGQVDLF 4054
Query: 149 --KGKYVSTDTYEAHVWVIQGKEVVMCTDKRLLYLE----KNNVFG----GWQIVWSYLW 298
+GK+ STD YE H + +GK +++ T +R+L L+ F ++W LW
Sbjct: 4055 KVRGKFASTDAYEDHFMLPKGK-ILLITHRRVLLLQVPMMTQRKFSPAKDPCSVIWDVLW 4113
Query: 299 SELPEVPSSVAK 334
+L V + K
Sbjct: 4114 DDLVTVEMTHGK 4125
>08_02_1407 + 26858677-26859153
Length = 158
Score = 33.1 bits (72), Expect = 0.087
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 315 TSGSSLHKYDHTICQPPKTLFFSRYRRRLS 226
TSG +LH+YDH + PP RRR S
Sbjct: 9 TSGHALHRYDHAVSPPPLCRTLRHLRRRPS 38
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 135 CPNLKRANM*ALTRMKRTCGSYKARRWSCAL 227
CP L++ NM + +CG++K R W L
Sbjct: 841 CPQLEQENMWLEQNIPVSCGTFKIRNWRIKL 871
>10_01_0252 + 2646074-2646430,2646476-2648158
Length = 679
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 239 LYLEKNNVFGGWQIVWSYLWSELPEVPSSVAKGVYIPTAKKKVLGMF 379
LY + + +VWS W +P+ P S+ + + ++LG+F
Sbjct: 271 LYTKLRTLVPDHHVVWSTDWKNIPKSPRSIRSVLESISRILRILGLF 317
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 185 HVWVIQGKEVVMCTDKRLLYLEKNNVFGGWQIVWSYLWSELPEVPSSVAKGVY 343
H+WV G K++ +E+N W++VW + + ++ S + VY
Sbjct: 435 HLWVSNG----FIPSKKMSDIEENGNHVFWELVWRSFFQNVKQIGSIFQRKVY 483
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 30 QIYLKR*RSVGLRVTCPPSLV*DRTRGYTLKATKCCPN 143
Q + K R LR CPP + D + +K+ C N
Sbjct: 706 QCWGKENREAPLRTACPPGIPLDLVSNFEIKSFDACAN 743
>04_03_0407 - 15542495-15543247
Length = 250
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 400 FPGSRTREHSEYFLFSCRYVNTLGDRRW 317
FP S + S + FSC N +GD W
Sbjct: 76 FPCSASEPESNHTTFSCELENRMGDTIW 103
>03_06_0510 + 34423528-34424046,34424132-34425025
Length = 470
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +2
Query: 41 EEVTKRRAARYLPAESGVRPYSRLHAEGYKMLSELEKGKYVSTDTYEAHVWVIQGKEVV 217
EEV + RA +G + AEG ML G + Y HVW G EVV
Sbjct: 353 EEVLRHRAVGGFWTHNGWNSTTESLAEGVPMLCRPSFGDQMGNARYVEHVWK-AGFEVV 410
>03_05_0909 + 28692446-28692826
Length = 126
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 360 FLAVGM*TPLATDDGTSGSSLHKYD-HTICQPP 265
FL V ATDDG +G+S H + H C PP
Sbjct: 92 FLVVAAGEDAATDDG-AGASCHSNNVHITCAPP 123
>05_07_0206 - 28405109-28406671
Length = 520
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 35 LSEEVTKRRAARYLPAESGVRPYSRLHAEGYKMLSELEKGKYVS 166
++ +V KR+ Y+P + +HA G +L ELEK +S
Sbjct: 385 VTRKVLKRKVKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLS 428
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 210 SLPCMTHTCASYVSVLTYLPFSSS 139
SLPC+ HT + ++L +LP S+
Sbjct: 1422 SLPCVEHTDGFHTAILPFLPRRSA 1445
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 26.6 bits (56), Expect = 7.6
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +3
Query: 183 RTCGSYKARRW-SCALTN-VSCIWKRIMF-SAAGRSYGRIYGVNSPKCHRLSP---RVFT 344
R+ Y+ RR SC+ + VS ++R SA GRSY R H SP R +
Sbjct: 221 RSRSPYRYRRERSCSYDHSVSPYYRRCYSPSARGRSYSRSVSPQRSYSHSCSPDSQRSGS 280
Query: 345 YRQLKRKYSE--CSRVRDPGK 401
Y KR YSE SR R GK
Sbjct: 281 YSPRKR-YSERKPSRSRSSGK 300
>01_07_0370 -
43119049-43120278,43121376-43121420,43121421-43121662,
43121908-43122686,43123123-43123463,43123565-43123785,
43123866-43124176,43124257-43124516,43124836-43124918,
43124940-43125036,43125132-43125305,43126215-43126592
Length = 1386
Score = 26.6 bits (56), Expect = 7.6
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = +2
Query: 146 EKGKYVSTDTYEAHVWVIQGKEVVMCTDKRLLYLEKNNVFGGWQIVWSYLWSELPEVPSS 325
E+G+ + YE +I V+ D R L + N+ + +SYL PE+P
Sbjct: 344 EQGRIAAYRLYE----MISRSTSVVNQDGRTLPSVQGNIEFR-NVYFSYL--SRPEIP-- 394
Query: 326 VAKGVYIPTAKKKVLGMFSSSGSGK 400
+ G Y+ +K + + +GSGK
Sbjct: 395 ILSGFYLTVPARKTVALVGRNGSGK 419
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,349
Number of Sequences: 37544
Number of extensions: 276123
Number of successful extensions: 841
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -