Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P05
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.76 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.76 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 252 RIMFSAAGRSYGRIYGVNSPKCHRLSPRV 338
           R  +   GRS G I GVNS   ++  P +
Sbjct: 59  RFRYECEGRSAGSIPGVNSTSENKTFPTI 87


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 252 RIMFSAAGRSYGRIYGVNSPKCHRLSPRV 338
           R  +   GRS G I GVNS   ++  P +
Sbjct: 59  RFRYECEGRSAGSIPGVNSTSENKTFPTI 87


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 261 TLFFSRYRRRLSVHMTTSLPCMTHTCASYVSVLTYLPFS 145
           +LF+ +Y   L V +   +       +SYVSVLT + FS
Sbjct: 99  SLFWQQYPWVLGVSLC-KIRAYVSEMSSYVSVLTIVAFS 136


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 285 HTICQPPKTLFFS 247
           +T C+ PKT FFS
Sbjct: 408 YTRCENPKTNFFS 420


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 183 ASYVSVLTYLPFS 145
           +SYVSVLT + FS
Sbjct: 117 SSYVSVLTIVAFS 129


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -3

Query: 297 HKYDHTICQPPKTLFFSRYRRRL-SVHMTTSLPC 199
           H Y HTI  P K L  S+    L S+ +T    C
Sbjct: 129 HSYVHTITVPNKLLRISQDGDILYSMRLTIKAKC 162


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 366 TFFLAVGM*TPLATDDGTSGSSLHKYDHTICQPPK 262
           T  L++ M   +   D    +  H Y HTI  P K
Sbjct: 74  TLALSISMLARIWKPDTYFYNGKHSYLHTITSPNK 108


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 195 SYKARRWSCALTNVSC 242
           S +ARR  C   +V+C
Sbjct: 253 SIRARRTECVTNSVTC 268


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 224 TDKRLLYLEKNNVFGGWQIVWSYLWSELPEVP 319
           +D  L      N FG      + +  E+PEVP
Sbjct: 848 SDSALFTCVATNAFGSDDTSINMIVQEVPEVP 879


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 228 SVHMTTSLPCMTHTCASYVSVLTYLPFS 145
           S ++T S  C   +  SY+ VLT +  S
Sbjct: 626 STNVTLSTKCPYPSYYSYIGVLTLVATS 653


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 347 VCKHPWRQ 324
           +C+H WRQ
Sbjct: 379 ICEHRWRQ 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,989
Number of Sequences: 438
Number of extensions: 2789
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)