Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P04
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    27   5.8  
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760...    27   5.8  

>03_01_0224 -
           1771582-1771727,1771855-1771980,1772489-1772517,
           1772689-1772747,1772816-1772929,1773030-1773238,
           1773347-1774087,1775678-1776238,1776295-1776419,
           1778187-1778317,1779020-1779178,1779471-1779728,
           1780140-1780164,1780531-1780592,1780944-1781003,
           1781112-1781219,1781703-1781838,1781880-1781929,
           1782024-1782096,1782209-1782345,1782441-1782527,
           1782624-1782721,1783259-1783369,1783685-1783769,
           1783880-1783969
          Length = 1259

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 423 KHYDKNDIIRKQTSF*RDLAIEKMLINT-*FQINCYLN 313
           K YD+ DI+  Q S  RD  I  +  N   F+I  Y+N
Sbjct: 181 KRYDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVN 218


>01_06_1416 -
           37174913-37175006,37175299-37175441,37175932-37176027,
           37177125-37177364,37177456-37177812,37178020-37178097,
           37178387-37178434,37179406-37179675,37179954-37180054,
           37180452-37180605
          Length = 526

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 465 LLD*NLRIILRSCVKHYDK 409
           LLD NL +I+  C++HYD+
Sbjct: 276 LLDTNLGLIVEECMQHYDE 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,991,737
Number of Sequences: 37544
Number of extensions: 107689
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)