Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P04
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical p...    27   5.2  

>Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 96  IQTYV*LKLNLLNLDIMYYIFL----QFFYIVFTSC 1
           +  Y  +  +L+   ++Y IFL    Q FY++FTSC
Sbjct: 604 LMVYTIIATDLVRFAMIYSIFLVGFSQSFYLIFTSC 639


>Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 96  IQTYV*LKLNLLNLDIMYYIFL----QFFYIVFTSC 1
           +  Y  +  +L+   ++Y IFL    Q FY++FTSC
Sbjct: 604 LMVYTIIATDLVRFAMIYSIFLVGFSQSFYLIFTSC 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,492,830
Number of Sequences: 27780
Number of extensions: 108341
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)