Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P03
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   159   2e-40
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   159   2e-40
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   0.70 
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    28   0.70 
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.0  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   5.0  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   5.0  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  159 bits (385), Expect = 2e-40
 Identities = 75/111 (67%), Positives = 84/111 (75%)
 Frame = +2

Query: 8   VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 187
           VAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAMLAAQD A KCK +G
Sbjct: 18  VAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVG 77

Query: 188 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 340
           ITALHIK+RA            AQ          M+IGRIEDVTP+P+DST
Sbjct: 78  ITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  159 bits (385), Expect = 2e-40
 Identities = 75/111 (67%), Positives = 84/111 (75%)
 Frame = +2

Query: 8   VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 187
           VAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAMLAAQD A KCK +G
Sbjct: 18  VAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVG 77

Query: 188 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 340
           ITALHIK+RA            AQ          M+IGRIEDVTP+P+DST
Sbjct: 78  ITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 71  ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 172
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 157 GCC*EM*NPGDNCP 198
           GCC +  +PGDNCP
Sbjct: 33  GCCPQCTSPGDNCP 46


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 193 SYPQGFTFLSNILCSQHSGVG*SLITISLHFHASGNTG 80
           S+P     LS+ +  QH G+  SL++  +++  S   G
Sbjct: 415 SFPAATLMLSDFVPKQHQGIAASLVSTVVNYSISIGLG 452


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 283 TSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQHSGVG 131
           TSE  +   G+ + S  L   +   L+     P G T  ++   SQ+SG G
Sbjct: 108 TSEDEDDYHGSANSSTVLPPRTENALHAASPKPSGSTGYTSPALSQNSGSG 158


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 85  TGNSFSTGQIGNVHECVIEGGEYV 14
           T   FS  Q   +HEC+++ G YV
Sbjct: 469 TKRLFSLLQSETIHECLVKAGGYV 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,365
Number of Sequences: 5004
Number of extensions: 31294
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)