Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P03
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 165 2e-41
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 152 1e-37
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 143 6e-35
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 8e-07
04_01_0296 + 3927741-3927960,3928257-3928900 28 3.7
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809... 27 4.9
02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718 27 4.9
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 6.5
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 27 8.6
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 8.6
05_01_0248 - 1864092-1864204,1864570-1864608,1864661-1864730,186... 27 8.6
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148... 27 8.6
02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139 27 8.6
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 165 bits (400), Expect = 2e-41
Identities = 79/111 (71%), Positives = 87/111 (78%)
Frame = +2
Query: 8 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 187
VAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LG
Sbjct: 52 VAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELG 111
Query: 188 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 340
ITALHIKLRA AQ MKIGRIEDVTPVP+DST
Sbjct: 112 ITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 152 bits (369), Expect = 1e-37
Identities = 79/122 (64%), Positives = 87/122 (71%), Gaps = 11/122 (9%)
Frame = +2
Query: 8 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 187
VAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LG
Sbjct: 30 VAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELG 89
Query: 188 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI-----------EDVTPVPSD 334
ITALHIKLRA AQ MKIGRI EDVTPVP+D
Sbjct: 90 ITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTEDVTPVPTD 149
Query: 335 ST 340
ST
Sbjct: 150 ST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 143 bits (346), Expect = 6e-35
Identities = 69/100 (69%), Positives = 76/100 (76%)
Frame = +2
Query: 8 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 187
VAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LG
Sbjct: 29 VAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELG 88
Query: 188 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 307
ITALHIKLRA AQ MKIGRI
Sbjct: 89 ITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 8e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +2
Query: 86 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 178
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 86 VTGGMKVKADRDEASPYAAMLAAQDVA 166
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 382 KKLQPASSSSTLPAC--GVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTE 209
+K + SSSST C V R G + LHA TSES ++ R+ + L+T S +
Sbjct: 215 RKEREGSSSSTPCRCMRQVGRQLGMRPDGPKLHATTSESQAGQVPVRTGGVHLMTYSGGQ 274
Query: 208 LNVQ 197
+Q
Sbjct: 275 PTLQ 278
>09_02_0373 -
8098060-8098229,8098316-8098375,8098486-8098674,
8098994-8099108,8099374-8099427,8099600-8099709,
8099792-8099879,8099969-8100181
Length = 332
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3
Query: 169 LSNILCSQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEY 17
L NI+ H VG ++T L + GNT ++ IG V C I GG Y
Sbjct: 37 LLNIIEPFHRFVGRDMMT-DLRYPLKGNTVPFWAVPLIGIVLPCAIFGGIY 86
>02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718
Length = 332
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 174 HFSATSCAANIAA*GEASSRSAFTFMPPVTRAIVSRPDRSVTCTNVSLKEANMCATLC 1
H SA S A AA +A S F+PP AI++R D + + ++ A LC
Sbjct: 33 HSSAVSPAFRAAADSDAVWDS---FLPPDHAAILARADDGIAAAGECASKKDLFARLC 87
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 11 AHIFASFNDTFVHVTDLSGRETIARVT 91
+H+++ D V++TDLS RE++ T
Sbjct: 280 SHVYSGGRDQSVYLTDLSNRESVLLCT 306
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 375 YSLRPLRPPFLRVESDGTGVTSSMRPI 295
Y LRP PFLR +S G SS+ I
Sbjct: 1712 YFLRPKMKPFLRSDSTGHSADSSINHI 1738
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 283 TSESTESRLGTRSRSLCLVTS 221
TS S + R+GTRSRS +V S
Sbjct: 778 TSSSRDRRIGTRSRSSVMVNS 798
>05_01_0248 -
1864092-1864204,1864570-1864608,1864661-1864730,
1864976-1865043,1866114-1866201,1866282-1866309,
1866406-1866451,1866571-1866796
Length = 225
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 370 PASSSSTLPACGVRRHRGHIFNAANLHAGTSESTESRLGTRSRS 239
PA++++ +CGV RH H A+ T+ +T SRL SRS
Sbjct: 4 PATAAAAAASCGVLRH--HHPPASPRPPPTTTTTTSRLLLASRS 45
>03_05_0377 +
23613181-23613342,23614469-23614501,23614606-23614879,
23615105-23615585,23616174-23616846
Length = 540
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 229 QDKDSWTWCPVCSPCSRSFQ 288
+D DS WCP C R+ Q
Sbjct: 214 EDNDSVKWCPSAPHCGRAIQ 233
>02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139
Length = 172
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 216 ARSLMCRAVIPRVLHFSATSCAANIAA 136
A +L+CR PR+LH A CAA +A+
Sbjct: 131 ATTLLCR---PRLLHLRADVCAAALAS 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,648
Number of Sequences: 37544
Number of extensions: 238706
Number of successful extensions: 712
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -