Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P03
(432 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-5|AAC48301.1| 152|Caenorhabditis elegans Ribosomal prote... 163 4e-41
Z81125-4|CAB03383.3| 594|Caenorhabditis elegans Hypothetical pr... 28 3.3
U80451-11|AAB37845.2| 206|Caenorhabditis elegans Glutathione s-... 27 4.4
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 27 4.4
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 27 4.4
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 27 4.4
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 27 4.4
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF125954-3|AAD14706.3| 323|Caenorhabditis elegans Serpentine re... 27 7.7
AC006769-4|AAF60584.1| 323|Caenorhabditis elegans Hypothetical ... 27 7.7
>U00033-5|AAC48301.1| 152|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 14 protein.
Length = 152
Score = 163 bits (397), Expect = 4e-41
Identities = 79/111 (71%), Positives = 85/111 (76%)
Frame = +2
Query: 8 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 187
VAHIFASFNDTFVH+TD+SGRETI RVTGGMKVKADRDE+SPYAAMLAAQDVA++CK LG
Sbjct: 31 VAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLG 90
Query: 188 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 340
I ALHIKLRA AQ MKIGRIEDVTP+PSD T
Sbjct: 91 INALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141
>Z81125-4|CAB03383.3| 594|Caenorhabditis elegans Hypothetical
protein T22A3.6 protein.
Length = 594
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 271 TESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQ 146
TESRL + + C++ + R + V+ SY + F + L S+
Sbjct: 487 TESRLFMNTEASCMLLNRRNSVEVKNSYKESPFFTNEKLVSE 528
>U80451-11|AAB37845.2| 206|Caenorhabditis elegans Glutathione
s-transferase protein 6 protein.
Length = 206
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 217 RTELNVQGSYPQGFTFLSNILCSQHSG--VG*SLITISL 107
RT++ V ++ + F F NIL S HSG VG SL + L
Sbjct: 121 RTDVFVP-AFKKNFEFFENILASNHSGFFVGNSLTWVDL 158
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 281 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 183
ERE Q Q Q++L Q H A A QL+P
Sbjct: 408 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 440
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
protein 27,isoform b protein.
Length = 1124
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 281 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 183
ERE Q Q Q++L Q H A A QL+P
Sbjct: 920 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 952
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 281 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 183
ERE Q Q Q++L Q H A A QL+P
Sbjct: 925 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 281 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 183
ERE Q Q Q++L Q H A A QL+P
Sbjct: 925 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 112 SLHFHASGNTGNSFSTGQIGNVHECVIEGGEYV 14
S+ A G+ GN F+ G+ G V E VIE + V
Sbjct: 237 SIEGGAIGHNGNLFTVGEEGVVKEFVIETAKLV 269
>AF125954-3|AAD14706.3| 323|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 71 protein.
Length = 323
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 232 LVTSSRTELNVQGSYPQGFTFLSNILCSQHSGV 134
LVT+ +++Q GF+ ++NILCS +G+
Sbjct: 159 LVTTFYPTIDLQNYTLSGFSDVTNILCSTATGI 191
>AC006769-4|AAF60584.1| 323|Caenorhabditis elegans Hypothetical
protein Y45G12C.9 protein.
Length = 323
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 232 LVTSSRTELNVQGSYPQGFTFLSNILCSQHSGV 134
LVT+ +++Q GF+ ++NILCS +G+
Sbjct: 159 LVTTFYPTIDLQNYTLSGFSDVTNILCSTATGI 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,531
Number of Sequences: 27780
Number of extensions: 194697
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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