Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P02
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    28   0.85 
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   1.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   2.0  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   4.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   6.0  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.0  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   7.9  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   7.9  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.9  

>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 250 LKLMSYGVEVSDHQVAQLLLSPSFIPLSQS 339
           L LM+     S  Q   LLL PS+IP++Q+
Sbjct: 143 LSLMNNAYNKSSAQQPNLLLQPSYIPMTQT 172


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 171 PPASRQLTK--QPPLCQQKNIKQYYYCYKNVNY 79
           P  S+Q T   + P+ QQ+N++Q YY  +N NY
Sbjct: 650 PFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNY 682


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 336 IHAIQREPYPALYMVLNYELGFVPQ---NENDIQAMYSAMNQ 452
           +++ +R PY  +  VL+ EL F PQ   N+  +Q + S  NQ
Sbjct: 327 LNSAERVPYLIMVEVLSGELSFEPQSKKNKAKVQKIVSHKNQ 368


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 295 PPDGLTPPPHMTLVSVIYKIPVP 227
           PP+G  PP  + L+S I  +P P
Sbjct: 280 PPEGSPPPMPIELLSYIINMPPP 302


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 260 CHMGWRCQTIRWLSSYYLHPLSH-YLNPRNTE 352
           CH G     + W  SY+   LSH +L  R T+
Sbjct: 20  CHHGRSHSDLEWTLSYFHDELSHKFLANRKTD 51


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 181 FFRLLQQNY*LMIKNWAQEFYISLKLMSYGVEVSDHQVAQLLLSPSFIPLSQSTQYRGNL 360
           F +LL +N     +NW     I ++L  Y   + DH++    L P    LS+   Y+  L
Sbjct: 313 FVQLLSKN-----RNWVLMRDI-VQLEEYNSYLLDHRIVSAFLKP----LSEKGNYKDIL 362

Query: 361 ILPSTW 378
            L S W
Sbjct: 363 SLISVW 368


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 476 WVRMEGLALIHSAVHSLDIVLILRDKP*FIIEHHVEGRIRFPLYCV 339
           W+ ++    + S +    I L +     FII+ H E R  +P+Y V
Sbjct: 301 WINLDSFLDLSSVISPFYIWLFI-----FIIQPHKEERFMYPIYPV 341


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 455 ALIHSAVHSLDIVLILRDKP 396
           A++H  VH + I  IL D+P
Sbjct: 38  AMVHDGVHLISIKTILTDQP 57


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 165 ASRQLTKQPPLCQQKNIKQYYYCYKNVNYMFELLDSCTTN 46
           ASR++T         NI +YY   K+  +++ +++ C  N
Sbjct: 692 ASREITLLQQSDNHPNIVRYYCKQKSDQFLYIVIELCKCN 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,588
Number of Sequences: 5004
Number of extensions: 44151
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)