Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P01
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   1.2  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   5.0  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   5.0  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   8.7  

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 132 VG*GGASVIYRMPSPERQRL 73
           VG GG+S++YR+ SP+  RL
Sbjct: 322 VGKGGSSMVYRIFSPDNSRL 341


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -2

Query: 267 LIQFILRSDNSSSYILSXENNRHRWCSTAQTK*DIKSGHRSCSFCVG*GGASVIYRMPSP 88
           L++FI+  D+SSSY    ++    W   AQ    ++ G+  CS      G   I+ + S 
Sbjct: 365 LMEFIMPHDSSSSY---NQDMPAIWSLNAQIPRTLQYGNADCSCWTTGCGEFDIFEVLST 421

Query: 87  ERQRLI 70
             +++I
Sbjct: 422 GNEKMI 427


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 331 LQKK*KKNNTPFVYIYIIYRNPNTIYFEKRQQLLLHTK 218
           ++K+ + N  P   IY+++  P+  Y      LLL TK
Sbjct: 482 IRKQIEPNIPPKELIYVLFFQPSAFYINSMVGLLLLTK 519


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 10  VCFIVHV*MYVSYITVCRWYYQTLTFG*RH 99
           V  I+ V M V  + +C W  Q   FG RH
Sbjct: 159 VVVIIAVAM-VKILYICHWLLQNFNFGFRH 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,590
Number of Sequences: 5004
Number of extensions: 41790
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)