Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P01
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475...    29   2.2  
06_01_0494 + 3539804-3539949,3540466-3540826                           28   5.0  
04_04_0024 - 22216105-22217856                                         27   6.6  

>12_01_0582 -
           4752576-4752786,4752955-4753037,4753324-4753530,
           4755128-4755207,4756853-4756998,4757088-4757719
          Length = 452

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 45  LHNSLSMVLSDADVRVKAFCILPKPRLT 128
           L + L+++LS + V + A C+LPKP ++
Sbjct: 330 LQHVLAVLLSGSGVLIPAVCVLPKPEMS 357


>06_01_0494 + 3539804-3539949,3540466-3540826
          Length = 168

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 93  SPERQRLIIPSTDCYVRYIHLHVHNETYP 7
           S  R+R+  PS  C +   HL +HN  YP
Sbjct: 55  SRPRERINEPSPGCSISPPHLSLHNAQYP 83


>04_04_0024 - 22216105-22217856
          Length = 583

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 123 GGASVIYRMPSPERQRLII 67
           GGAS I  +PSP RQRL I
Sbjct: 561 GGASSIQEVPSPVRQRLDI 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,656
Number of Sequences: 37544
Number of extensions: 250787
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)