Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P01
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   1.5  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    28   3.4  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        28   3.4  
Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    27   6.0  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    27   6.0  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    27   6.0  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    27   6.0  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    27   7.9  

>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 410 NNSRKSKVKFYWVDYFLYGSGVNRLLLTKKIKKKQYSFCLYLYYIS 273
           N    + V + W+  FLY   +    +   I+   YS CLY+  +S
Sbjct: 5   NMDASTNVPYLWLPIFLYDEPILASQVIASIELILYSICLYIVVVS 50


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 336 IAYKKNKKKTILLLSIFILYIGTLIQFI 253
           I YK    + +L+L IF++Y  +L+QF+
Sbjct: 117 ILYKPAPTRPVLVLIIFLIYTPSLLQFV 144


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 362 ENNPPNKILPLIFYCYFRTIS*LV*VLKLITTSILLN 472
           E NP NK+L  + YC+   ++  + +LKLI   ILL+
Sbjct: 366 EENPRNKVLQYMDYCFTGVLACEM-LLKLIDQGILLH 401


>Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC455.11 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 389 PLIFYCYFRTIS*LV*VLKLITTSILLNAYDNYLCS 496
           P+ FY Y +TIS     + LITTSI+ N     +C+
Sbjct: 115 PIYFYNYRKTISNFPIYIFLITTSIVCNTVLFKVCN 150


>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
           protein 2, isoform a protein.
          Length = 1538

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 362 ENNPPNKILPLIFYCYFRTIS*LV*VLKLITTSILLN 472
           E NP NK+L  + YC+    +  + +LKLI   ILL+
Sbjct: 760 EENPRNKVLQYMDYCFTGVFACEM-LLKLIDQGILLH 795


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
           protein 2, isoform c protein.
          Length = 1926

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 362 ENNPPNKILPLIFYCYFRTIS*LV*VLKLITTSILLN 472
           E NP NK+L  + YC+    +  + +LKLI   ILL+
Sbjct: 760 EENPRNKVLQYMDYCFTGVFACEM-LLKLIDQGILLH 795


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
           protein 2, isoform b protein.
          Length = 2027

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 362 ENNPPNKILPLIFYCYFRTIS*LV*VLKLITTSILLN 472
           E NP NK+L  + YC+    +  + +LKLI   ILL+
Sbjct: 879 EENPRNKVLQYMDYCFTGVFACEM-LLKLIDQGILLH 914


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
           activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 362 ENNPPNKILPLIFYCYFRTIS*LV*VLKLITTSILLN 472
           E NP NK+L  + YC+    +  + +LKLI   ILL+
Sbjct: 879 EENPRNKVLQYMDYCFTGVFACEM-LLKLIDQGILLH 914


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 150  DVPT*YLILSA--QYCTTDACYFXXLVCKRSC 239
            DVP   +++    +YCT+DAC    L C+  C
Sbjct: 2574 DVPVGLVVVDTKREYCTSDACADNELKCEDYC 2605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,570
Number of Sequences: 27780
Number of extensions: 240798
Number of successful extensions: 500
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)