Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O24
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    30   0.27 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    29   0.63 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   0.84 
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    28   0.84 
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   2.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   2.6  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   3.4  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   3.4  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   4.5  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   5.9  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   7.8  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   7.8  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 18/83 (21%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +1

Query: 25  EDENNKWVRAFR--KKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLG 198
           ED  NK +R  +  ++   +++     + ++++   ++L+   +   +SD+YE+    L 
Sbjct: 517 EDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEVLSKSSK---ESDDYEEVVGKLR 573

Query: 199 TGSDLDIEFLQKECREHPKLLTL 267
           T ++ +IE  +K  RE+ + ++L
Sbjct: 574 TEAEREIEKFEKTIRENEESISL 596


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 103 DEKIESNSQLLTSEPEMV-IDSDNYEQFFESLGTGSD----LDIEFLQKECREHPKLLTL 267
           +EK E+   + +  PE + I  D+Y Q +E  G G+D    L+ E  + E  E   L T+
Sbjct: 188 EEKYETGPPIESVRPEALGISDDDYIQIYEVFGDGTDYAFALEDEDAEDELEESVSLKTI 247


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +1

Query: 13  IAPPEDENNKWVRAFRKKTQIEIKPN----STSVDEKIESNSQLLTSEPEMVIDSDNYEQ 180
           I+  +D+ +   +   K++ +    N    S++++ K  S S+       ++ DSD    
Sbjct: 194 ISDSDDDESNTEQDHSKESNLNTADNDLALSSTIEGKKTSTSKEALESESLLSDSDQSMT 253

Query: 181 FFESLGTGSDLDIEFLQKECRE--HPKLLTL 267
              S  T SDL+++ L+K  R    P  LTL
Sbjct: 254 NISSNSTVSDLNLKTLKKRLRGVLPPSFLTL 284


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 27/113 (23%), Positives = 48/113 (42%)
 Frame = +1

Query: 223 FLQKECREHPKLLTLIAHRLPAPSLEKIADYVFFTKNTDDAFVKNFVKHSLPIILMKDYK 402
           FL+++C+  P +LT          L ++ DYV        + ++N   +   +I    + 
Sbjct: 176 FLKRDCKS-PLVLT---------RLVELGDYVLDLIIITQSIMQNNANNGTGVISRAKFL 225

Query: 403 RFYLDLIKLIMNKYSDIFTDLLEVIVKNENVSTNILCDLTTNINGGEKEVFSE 561
            FY+ L +LI NK S    + LE ++        I      N N   + ++SE
Sbjct: 226 EFYVFLEQLIFNKLSFASVEQLEKLLDQIVKRMKICFTYCKNDNPSIRLLYSE 278


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 226 LQKECREHPKLLTLIAHRLPAPS--LEKIADYVFFTKNTDDAFVKNFVKHSLP 378
           L + C++   L    AH++PAP   +E  AD++ F    D   +   +   +P
Sbjct: 190 LVRACKDAQVLFHPAAHQIPAPHAYVEPAADFIDFFSREDWPIISKHISLIVP 242


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 325 TKNTDDAFVKNFVKHSLPIILMKDYKRFYLDLIKLIMNKYSDIFTDLLEVIVKNENVSTN 504
           T   D   +K+FVK SLP I     +   +DL  +  + +  ++TD L   + +  +   
Sbjct: 631 TSRADQLVLKSFVKESLPEI-YSHLELLGVDLDAISFHWFLSVYTDTLPTNI-SFRIFDM 688

Query: 505 ILCD 516
           + CD
Sbjct: 689 LFCD 692


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 352 KNFVKHSLPIILMKDYKRFYLDLIKLIMNKYSDIFTDLLEV 474
           K  +  SLP +L    KRF  D+++ +M K +D     LE+
Sbjct: 407 KGIIFESLPNVLQLQLKRFDYDMLRDMMVKINDRHEFPLEI 447


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 563 CSEKTSFSPPFILVVRSHNMFVDTFSFL 480
           C EK   +    L+ +S N +VDTF FL
Sbjct: 376 CVEKGIMTKDLYLLSKSPNGYVDTFEFL 403


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 34  NNKWVRAFRKKTQIEIKPNST 96
           N  W+  +R KTQ+ +KP +T
Sbjct: 86  NIDWMNKYRGKTQLALKPKTT 106


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 278 VYQRHLWKKLLTTFSSLKIQMTLSSKTLL 364
           V + +LWKKL +  S++KIQ +L    LL
Sbjct: 448 VLRLYLWKKLRSYKSTMKIQKSLLVNWLL 476


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +1

Query: 22  PEDENNKWVRAFRKKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESL 195
           P  +NN+W    RK+  +E      S      +  Q+L  + E + D  N     +SL
Sbjct: 94  PSTQNNEWNEIARKRVSLESDHPDKSGQVIDLATGQILDKQTEDIDDDRNKSAVSKSL 151


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 23/104 (22%), Positives = 47/104 (45%)
 Frame = +1

Query: 85  PNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDLDIEFLQKECREHPKLLT 264
           P++ S DE  +    L+  +P+++  S    +   SL  G  ++I    ++ ++  K   
Sbjct: 39  PSTPSEDEMPQCFEDLI--KPQVL--SSEASKSLLSLNEGIKMEIVSSLQQ-KDQKKRNK 93

Query: 265 LIAHRLPAPSLEKIADYVFFTKNTDDAFVKNFVKHSLPIILMKD 396
           LIA     P  E+  D++ +  NT    +   + H L ++L  +
Sbjct: 94  LIAWMRKKPCYEQPDDFISYIVNTKIDSIDESIIHKLALLLRNE 137


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 442 YSDIFTDLLEV--IVKNENVSTNILCDLTTNINGGEKEVFSEHS 567
           YS+I  DL +   I  + N+S +++ D+TT+ +  ++ VF   S
Sbjct: 511 YSEIKDDLNDAKYICFDGNISPSLMLDITTSKSSKQRVVFEPTS 554


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +1

Query: 304 IADYVFFTKNTDDAFVKNFV-----KHSLPIILMKD 396
           I  Y+FF+K  D  +V+ FV     + +LP+ L +D
Sbjct: 309 ILSYMFFSKLLDSRYVQRFVTSKRKQPTLPLALQED 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,023
Number of Sequences: 5004
Number of extensions: 46344
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)