Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O24
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0100 + 11735424-11735958,11736168-11736916,11752859-117531... 34 0.092
08_01_0724 - 6426263-6426514,6428511-6428742,6429081-6429400,643... 33 0.21
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 32 0.37
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 31 0.65
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 30 1.5
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 2.0
01_06_0479 + 29631435-29631608,29632769-29632864,29633065-296331... 28 4.6
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 6.0
01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150... 28 6.0
>06_02_0100 +
11735424-11735958,11736168-11736916,11752859-11753118,
11760085-11760124
Length = 527
Score = 33.9 bits (74), Expect = 0.092
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +1
Query: 19 PPEDENNKWVRAFRKKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESL 195
P ED+ W+R R + KP S VD +ES LL + D EQFF SL
Sbjct: 125 PAEDDKANWLRFRRLPVAVVSKP-SVEVDGTLESRLILLLKVACRLSTRDLCEQFFRSL 182
>08_01_0724 -
6426263-6426514,6428511-6428742,6429081-6429400,
6433071-6433163,6433188-6433354,6433432-6433846
Length = 492
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 19 PPEDENNKWVRAFRKKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQF 183
P ED+ W+R +R I +KPN +D +ES LL + D E+F
Sbjct: 50 PAEDDKANWLRFWRLAVSIVVKPN-VEIDGTLESRLILLRKVLRRLSTHDLCEEF 103
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +1
Query: 25 EDENNKWVRAFRKKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTG 204
E+E K + +KK + K ++EK+ES + E + D ++ EQ + G
Sbjct: 77 EEEGEKGEKRVKKKRRSRKKRKVKEMEEKMESKEDVSDDNVEDMQDGNDMEQ-DNNDGLI 135
Query: 205 SDLDIEFLQKECREHPKLLTLI 270
D + +E R HP L+T +
Sbjct: 136 LGEDEVYAWRELRLHPLLITAV 157
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 391 KDYKRFYLDLIKLIMNKYSDIFTDLLEVIVKNENVST 501
KDYK Y I +++KY++++ +L++ +K N +T
Sbjct: 413 KDYKDKYYRSIMPLVHKYNEVWLELMDQAIKENNKAT 449
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 31 ENNKWVRAFRKKTQIEIKPNSTSVDEKIE--SNSQLLTSEPEMVIDSDNYEQFFESLGTG 204
E N+ + + K Q++++ T VDEK+E + S +T + ID + EQ E L
Sbjct: 106 EFNRRLDEWVKLEQLDLETVETDVDEKVEDKATSLKMTRHQKRKIDETHVEQGHEELDAA 165
Query: 205 S 207
S
Sbjct: 166 S 166
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 115 ESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDLDIEFLQKECREHPKLLTLIAHRLPAPS 294
+S+ +LL + E + + + + +E D+E L+KEC E K T + L A
Sbjct: 298 DSSKELLEAAEETIEELRDEAKMWERHSRKLKADLEMLKKECSEKSKQQTELEAELSAAH 357
Query: 295 LEK 303
E+
Sbjct: 358 AER 360
>01_06_0479 +
29631435-29631608,29632769-29632864,29633065-29633106,
29633220-29633306,29635246-29635272,29635536-29635916
Length = 268
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 70 QIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDL 213
Q++I DE E +L S PE+ + + Y FF+ G D+
Sbjct: 186 QVDISAFVPHADENHEIFDGILNSLPEIPVANVRYSDFFDPFDDGMDM 233
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 28 DENNKWVRAFRKKTQIEIKPNSTSVDEKIESNSQLLTSEP 147
DE+ K + KK Q + S+S DE E +S + + EP
Sbjct: 379 DEDVKQKQTQAKKVQAPVAQESSSSDESSEEDSDMESDEP 418
>01_06_1834 +
40214378-40214563,40214728-40214818,40215006-40215093,
40215444-40215695,40215927-40216101,40216243-40216329,
40216445-40216513,40216638-40216734,40217010-40217092,
40217373-40217480,40217672-40217793,40217921-40218028,
40218121-40218194,40218492-40218617,40219655-40219722,
40219930-40220079,40220164-40220214,40220678-40220734,
40220824-40220970,40221064-40221155,40221516-40221625,
40221728-40221791,40221883-40222032,40222554-40222788
Length = 929
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 145 PEMVIDSDNYEQFFESLGTGSDLDIEFLQKECREHPKLLTLIAHRLPAPSL 297
P+M DS N + S+ +++DI FL E+P + I +RL P L
Sbjct: 303 PDMAEDSSNVIVYQVSMKRSAEVDIVFLSGAASENPMIEERI-NRLTGPVL 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,446
Number of Sequences: 37544
Number of extensions: 255020
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -