Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O24
         (570 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88878-1|AAC34133.1|  784|Homo sapiens Toll-like receptor 2 prot...    33   0.94 
BC033756-1|AAH33756.1|  784|Homo sapiens TLR2 protein protein.         33   0.94 
AF502291-1|AAM23001.1|  586|Homo sapiens toll-like receptor 2 pr...    33   0.94 
AF051152-1|AAC34377.1|  784|Homo sapiens Toll/interleukin-1 rece...    33   0.94 
Z97632-4|CAB10730.1|  755|Homo sapiens HIV-1 Tat specific factor...    30   5.0  
U76992-1|AAB18823.1|  754|Homo sapiens Tat-SF1 protein.                30   5.0  
BT006886-1|AAP35532.1|  755|Homo sapiens HIV TAT specific factor...    30   5.0  
BC009896-1|AAH09896.1|  755|Homo sapiens HIV-1 Tat specific fact...    30   5.0  
AB209303-1|BAD92540.1|  758|Homo sapiens HIV TAT specific factor...    30   5.0  

>U88878-1|AAC34133.1|  784|Homo sapiens Toll-like receptor 2
           protein.
          Length = 784

 Score = 32.7 bits (71), Expect = 0.94
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 220 EFLQKECREH--PKLLTLIAHRLPAPSLEKIADYVFFTKNTDDAFVKNFVKHSLPIILMK 393
           E+L+    E   P L TLI  +    SLEK  + +   KN  +  +     HS+P     
Sbjct: 375 EYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQW 434

Query: 394 DYKRFYLDLIKLIMNKYSDIFTDLLEVI-VKNENVS 498
             K  YL+L    ++  +      LE++ V N N++
Sbjct: 435 PEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 470


>BC033756-1|AAH33756.1|  784|Homo sapiens TLR2 protein protein.
          Length = 784

 Score = 32.7 bits (71), Expect = 0.94
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 220 EFLQKECREH--PKLLTLIAHRLPAPSLEKIADYVFFTKNTDDAFVKNFVKHSLPIILMK 393
           E+L+    E   P L TLI  +    SLEK  + +   KN  +  +     HS+P     
Sbjct: 375 EYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQW 434

Query: 394 DYKRFYLDLIKLIMNKYSDIFTDLLEVI-VKNENVS 498
             K  YL+L    ++  +      LE++ V N N++
Sbjct: 435 PEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 470


>AF502291-1|AAM23001.1|  586|Homo sapiens toll-like receptor 2
           protein.
          Length = 586

 Score = 32.7 bits (71), Expect = 0.94
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 220 EFLQKECREH--PKLLTLIAHRLPAPSLEKIADYVFFTKNTDDAFVKNFVKHSLPIILMK 393
           E+L+    E   P L TLI  +    SLEK  + +   KN  +  +     HS+P     
Sbjct: 375 EYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQW 434

Query: 394 DYKRFYLDLIKLIMNKYSDIFTDLLEVI-VKNENVS 498
             K  YL+L    ++  +      LE++ V N N++
Sbjct: 435 PEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 470


>AF051152-1|AAC34377.1|  784|Homo sapiens Toll/interleukin-1
           receptor-like protein 4 protein.
          Length = 784

 Score = 32.7 bits (71), Expect = 0.94
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 220 EFLQKECREH--PKLLTLIAHRLPAPSLEKIADYVFFTKNTDDAFVKNFVKHSLPIILMK 393
           E+L+    E   P L TLI  +    SLEK  + +   KN  +  +     HS+P     
Sbjct: 375 EYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQW 434

Query: 394 DYKRFYLDLIKLIMNKYSDIFTDLLEVI-VKNENVS 498
             K  YL+L    ++  +      LE++ V N N++
Sbjct: 435 PEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 470


>Z97632-4|CAB10730.1|  755|Homo sapiens HIV-1 Tat specific factor 1
           protein.
          Length = 755

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 61  KKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDLDIEFLQKEC 240
           K+++ E+ P   S ++  E  S    SE +     D  E+ FE  G   DLD E  +KE 
Sbjct: 527 KESEEEVGPTKESEEDDSEKESDEDCSEKQ---SEDGSEREFEENGLEKDLDEEGSEKEL 583

Query: 241 REH 249
            E+
Sbjct: 584 HEN 586


>U76992-1|AAB18823.1|  754|Homo sapiens Tat-SF1 protein.
          Length = 754

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 61  KKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDLDIEFLQKEC 240
           K+++ E+ P   S ++  E  S    SE +     D  E+ FE  G   DLD E  +KE 
Sbjct: 526 KESEEEVGPTKESEEDDSEKESDEDCSEKQ---SEDGSEREFEENGLEKDLDEEGSEKEL 582

Query: 241 REH 249
            E+
Sbjct: 583 HEN 585


>BT006886-1|AAP35532.1|  755|Homo sapiens HIV TAT specific factor 1
           protein.
          Length = 755

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 61  KKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDLDIEFLQKEC 240
           K+++ E+ P   S ++  E  S    SE +     D  E+ FE  G   DLD E  +KE 
Sbjct: 527 KESEEEVGPTKESEEDDSEKESDEDCSEKQ---SEDGSEREFEENGLEKDLDEEGSEKEL 583

Query: 241 REH 249
            E+
Sbjct: 584 HEN 586


>BC009896-1|AAH09896.1|  755|Homo sapiens HIV-1 Tat specific factor
           1 protein.
          Length = 755

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 61  KKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDLDIEFLQKEC 240
           K+++ E+ P   S ++  E  S    SE +     D  E+ FE  G   DLD E  +KE 
Sbjct: 527 KESEEEVGPTKESEEDDSEKESDEDCSEKQ---SEDGSEREFEENGLEKDLDEEGSEKEL 583

Query: 241 REH 249
            E+
Sbjct: 584 HEN 586


>AB209303-1|BAD92540.1|  758|Homo sapiens HIV TAT specific factor 1
           variant protein.
          Length = 758

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 61  KKTQIEIKPNSTSVDEKIESNSQLLTSEPEMVIDSDNYEQFFESLGTGSDLDIEFLQKEC 240
           K+++ E+ P   S ++  E  S    SE +     D  E+ FE  G   DLD E  +KE 
Sbjct: 530 KESEEEVGPTKESEEDDSEKESDEDCSEKQ---SEDGSEREFEENGLEKDLDEEGSEKEL 586

Query: 241 REH 249
            E+
Sbjct: 587 HEN 589


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,237,229
Number of Sequences: 237096
Number of extensions: 1368432
Number of successful extensions: 3674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3674
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)