Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O22
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    33   0.031
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    28   0.66 
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   2.7  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   3.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.5  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   6.1  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    25   8.1  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 32.7 bits (71), Expect = 0.031
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +3

Query: 222 CLLCNETFQSLSQVEKHIRWENHRKSVK 305
           C++CN+ F+S +Q+E H   + H+K+++
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLR 299



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +3

Query: 369 CAICNYCTQDIKSLTNHVNDETHKTN--KANPE 461
           C +CN   +    L NH N + HK N  K N E
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQE 304


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 222 CLLCNETFQSLSQVEKHIRWENHRKSVKIQTCVPKFKQDFIYKLNKIYYCAICNYCTQDI 401
           CL C  +F S    +KH++  +H   +  +  +      F Y   KI     C  C ++ 
Sbjct: 210 CLFCAASFSSFDTCKKHMK-ASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTCNREF 268

Query: 402 KSL 410
           KSL
Sbjct: 269 KSL 271



 Score = 28.3 bits (60), Expect = 0.66
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 222 CLLCNETFQSLSQVEKHIRWENH 290
           CL CN  F+SL  V  H++ + H
Sbjct: 261 CLTCNREFKSLEAVRAHMQQKGH 283


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 219 HCLLCNETFQSLSQVEKHIRWENHRKSVK-IQTCVPKFKQDFIYKLNKIYYCAICNYCTQ 395
           +C +C + F  ++  E H + + H K+VK +Q+  P    +   K       A   +  +
Sbjct: 244 YCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPSTTSNTNEKQKGPKAIARIEFLIK 303

Query: 396 DIKSLTNHVNDETHK 440
            + SL + V  +T +
Sbjct: 304 KLTSLLDDVRKDTRE 318


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 222 CLLCNETFQSLSQVEKHI 275
           C+LC   FQS   V KHI
Sbjct: 406 CVLCERKFQSWGHVVKHI 423


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 487 FPIEVLFTFSGFALLVLCVSSFTWF 413
           F +EVL+  S FA++   VS   W+
Sbjct: 170 FDVEVLYKVSPFAVVATAVSEDAWY 194


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 329 EFRYTRLNFYTFPVIFPTNMLFD 261
           EF  T+LNF+TFP+    N   D
Sbjct: 347 EFYETKLNFFTFPLECAINFHID 369


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 267 FRLDLKTGRFHYTADNDSPHLQ 202
           F +DLKT R    A N   HLQ
Sbjct: 756 FSVDLKTNRVRIIASNKREHLQ 777


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 282 PNEYAFRLDLKTGRFHYTADNDSPHLQIICNS*NAYSHSSW 160
           P+E  F   LK GRF Y  +N     Q + N   A+S   W
Sbjct: 271 PSELHFNRILKIGRFPYMYENAKMMEQSLLNL--AFSLDGW 309


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 210 VESHCLLCNETFQSLSQVEKHIRWENHRKSVKIQTCVPKFK 332
           +ES  +  N TFQS S++  ++      K+       PKF+
Sbjct: 122 IESPHVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFR 162


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 165 MNVNKHFKNYILFGDVESHCLLCNETFQSLSQVEKHIRWENHRKS-VKIQTCVPKFKQDF 341
           +++N+ FK   +  ++       +++F + + VEKHI WE      +KI     ++ +DF
Sbjct: 627 IDLNEPFKVLNVDSELIPAVYPISDSFVNSATVEKHI-WERKENDLIKISNHSTEYGKDF 685

Query: 342 I 344
           +
Sbjct: 686 V 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,903
Number of Sequences: 5004
Number of extensions: 43145
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)