Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O22
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 30 1.1
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287... 29 2.0
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 29 2.6
01_06_1412 - 37140654-37141088,37141549-37142214 28 3.5
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 24 4.2
12_02_0454 + 19199063-19200757,19202201-19202287 28 4.6
09_02_0366 + 7941550-7942161,7942230-7942775 28 4.6
02_02_0423 - 10064902-10064918,10064919-10064991,10066187-10066546 28 4.6
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459... 27 6.1
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 27 6.1
08_01_1026 - 10366534-10368021,10368505-10368525 27 6.1
08_01_0465 + 4099721-4100556,4101505-4103614 27 8.1
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 219 HCLLCNETFQSLSQVEKHIRWENHRKSVK 305
+CL C+ F S S E+H R + H+K +K
Sbjct: 65 YCLHCDRYFASESVKEEHYRSKRHKKRIK 93
>03_06_0561 +
34728428-34728439,34728529-34728615,34728729-34728750,
34728843-34728925,34729139-34729171,34729468-34729546,
34729642-34729694,34729931-34729991,34730168-34730250,
34730418-34730513
Length = 202
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 363 YYCAICNYCTQDIKSLTNHVNDETHKTNKANPENVNKTSI 482
YYC +C +D + +H+N + H+ V + S+
Sbjct: 82 YYCKVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 121
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 192 YILFGDVESHCLLCNETFQSLSQVEKH 272
Y ++ E+HC C++TF+S+ + +H
Sbjct: 1387 YQIYLAEETHCASCHKTFKSIHNISEH 1413
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 195 ILFGDVESHCLLCNETFQSLSQVEKHIRWENHRK 296
IL G V+ C +CN+TF + ++ H+ W + R+
Sbjct: 199 ILVGPVQFICHVCNKTFNRYNNMQMHM-WGHGRE 231
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 222 CLLCNETFQSLSQVEKHIRWENHRKSVK 305
C LC + SQ+E H R H++ V+
Sbjct: 295 CSLCQAKCNTESQLEHHRRSTRHQQKVE 322
Score = 22.6 bits (46), Expect(2) = 4.2
Identities = 7/30 (23%), Positives = 15/30 (50%)
Frame = +3
Query: 348 KLNKIYYCAICNYCTQDIKSLTNHVNDETH 437
K Y+C +C+ + L +H++ + H
Sbjct: 357 KQKATYFCEVCSLKCTSQRMLADHLSGKKH 386
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 213 ESHCLLCNETFQSLSQVEKHIRWENHRKSV 302
E +C+ CN+ F+S Q + H + + HR V
Sbjct: 309 ELYCVACNKKFKSDKQWKNHEQSKKHRDKV 338
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 195 ILFGDVESHCLLCNETFQSLSQVEKHI 275
IL G + C +CN+TF + ++ H+
Sbjct: 181 ILVGSTQFSCAVCNKTFNRFNNMQMHM 207
>02_02_0423 - 10064902-10064918,10064919-10064991,10066187-10066546
Length = 149
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 252 LSQVEKHIRWENHRKSVKIQ 311
L + KH+RWE H+ +++IQ
Sbjct: 103 LMEFPKHMRWEYHKSNLRIQ 122
>12_02_0661 +
21644328-21644517,21644697-21644875,21644899-21645922,
21647108-21647262
Length = 515
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 306 IQTCVPKFKQDFIYKLNKIYYCAICNYCTQDIKSLTNHVNDETHKTNKANPEN 464
I C F Y NK Y CAIC C + VN+ + + A P +
Sbjct: 415 IHVCKYTFNLIGGYAENKFYMCAICITCDKLADLRLKLVNNHAFEPSYAQPSH 467
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 354 NKIYYCAICNYCTQDIKSLTNHVNDETHK 440
N++YYC IC K + +H+ + H+
Sbjct: 379 NRMYYCDICEVRCSSEKMMASHLAGKRHR 407
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 369 CAICNYCTQDIKSLTNHVNDETHKTNKA 452
CA+C + K++ +H+N ++HK A
Sbjct: 53 CAVCGITSTGEKAMQDHLNGKSHKKKAA 80
>08_01_0465 + 4099721-4100556,4101505-4103614
Length = 981
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 321 PKFKQDFIYKLNKIYYCAICNYCTQDIKSLTNHVN 425
PKF+ D +Y+ +Y C + + I+SL+ N
Sbjct: 494 PKFQSDQVYEEGYVYGCRVHDMILDMIRSLSKEEN 528
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,824,457
Number of Sequences: 37544
Number of extensions: 224248
Number of successful extensions: 449
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -