Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O21
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   4.0  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.3  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    25   5.3  
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    25   7.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.2  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/48 (22%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 321 IENKIYKLYE-IHKKRNFI*SGPSIRTYSCSKFRRDRFSWTMVAEYKR 181
           I+N + +L++ +H+ ++F+    SI  +  +  +++R   T + ++KR
Sbjct: 302 IKNHLLELFKKLHRTQDFLIIAESINKFLSNPLKKERQIITFMGDFKR 349


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/55 (27%), Positives = 34/55 (61%)
 Frame = -2

Query: 527 YVLDLLLFNLKTNQ*NQTIEIDYYNPKSNSLQIVKDINESMKLK*YIFLQNKRIK 363
           Y++  L+F +   Q + +IE+ ++    + L+I+ D++ ++KL+  I L N+ +K
Sbjct: 204 YLISHLIFWIIDQQSSSSIEVCWHRIIPSVLRILNDLSPNIKLQ-GIELVNRLLK 257


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 56  QMGQHWHEHGRNACQSKLHARKGQIGLSVASQRYVRWEILVLRLYSATIVHENRSR 223
           + G  +H        S L AR G+  ++V+  RY+RW     R YS     + R+R
Sbjct: 43  ESGMLFHAGKLVIIMSGLPAR-GKSNIAVSIDRYLRWLGFNCRFYSLAKYIDERTR 97


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 62  GQHWHEHGRNACQSKLHARKGQIGLSVASQRYVRWEILVLRLYS 193
           GQ+   + + A +     R+G + LS AS R + W   + R+ S
Sbjct: 99  GQNTRTNAKTAKKLNKVPRRGYMTLSPASTRPITWSFCLPRMVS 142


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 515 LLLFNLKTNQ*NQTIEIDYYNPKSN 441
           LL  +++TN  + T+E+ Y NP++N
Sbjct: 843 LLGTSIRTNASDCTLEVAYLNPQNN 867


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,721
Number of Sequences: 5004
Number of extensions: 39157
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)