Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O19
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228...    30   1.6  
04_04_1377 - 33064906-33065607                                         26   1.6  
02_02_0310 - 8842286-8843314                                           29   3.7  
01_05_0602 + 23577328-23579805                                         28   4.8  
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    28   6.4  
12_01_0874 + 8384332-8384657,8385447-8386044                           27   8.5  
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238     27   8.5  

>04_03_0905 -
           20722090-20722207,20722314-20722395,20722698-20722851,
           20723026-20723089,20724282-20724404,20725326-20725452,
           20725541-20726171
          Length = 432

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 469 RAEWGRQWGW*CRAVRRVS*PKRRRGSSLRFG 374
           R+E GR+W W C    R    +RRRG     G
Sbjct: 179 RSEAGRRWRWRCSETARAPPQERRRGGRCTCG 210


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 26.2 bits (55), Expect(2) = 1.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 435 HHHPHCRPHSALQ 473
           HHHPH +PH   Q
Sbjct: 187 HHHPHLQPHGEEQ 199



 Score = 22.2 bits (45), Expect(2) = 1.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 420 RRTARHHHPHCRPH 461
           R+   HHH H  PH
Sbjct: 178 RQKHHHHHHHHHPH 191


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 336 TSRARGTHHSRSGPKRREDPRLRFGQETRRTAR-HHHPHCRPHSALQTRSLLHQIQD 503
           T R    HH     +  E+   R+ ++   ++R HHH  CR H      S  H+ +D
Sbjct: 262 TKRFHHHHHKDDDERELEEMARRWIRKALMSSRMHHHRGCRFHHHHHHLSFRHRAED 318


>01_05_0602 + 23577328-23579805
          Length = 825

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +3

Query: 339 SRARGTHHSRSGPKRREDPRLRFGQETRRTARHHHPHCRPHSALQTRSLLH 491
           SR    H S   P  R+D RLR   E  R+       C    AL+    LH
Sbjct: 33  SRLAAAHPSAPSPSPRDDERLRLRAEELRSYAAALQGCAASRALRRGKALH 83


>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 RFGQETRRTARHHHPHCRPHSALQTRS 482
           +  +  RR A   HPH +PHS L  R+
Sbjct: 181 QLAEMARREAETAHPHTQPHSDLSPRT 207


>12_01_0874 + 8384332-8384657,8385447-8386044
          Length = 307

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 429 ARHHHPHCRPHSALQTRSLLHQIQD 503
           AR  HP C+P   +  R L H + D
Sbjct: 8   ARQQHPTCQPSHGVPDRRLRHHVAD 32


>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
          Length = 472

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 312 DHLH*GTGTSRARGTHHSRSGPKRRED--PRLRFGQETRRTARHHHPH 449
           D +  G+  +  +GT  +   P R E   P +   +ET   + HHHPH
Sbjct: 192 DSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPH 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,935,701
Number of Sequences: 37544
Number of extensions: 149300
Number of successful extensions: 441
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)