Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O19
         (591 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10063-1|AAA57161.1|  423|Homo sapiens POU domain factor protein.      29   9.3  
AL591625-1|CAI41438.1|  791|Homo sapiens family with sequence si...    29   9.3  

>U10063-1|AAA57161.1|  423|Homo sapiens POU domain factor protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 432 RHHHPHCRPHSALQTRSLLHQIQDP 506
           RHHH H   H AL+   LL  I  P
Sbjct: 99  RHHHHHHHHHQALEPGDLLDHISSP 123


>AL591625-1|CAI41438.1|  791|Homo sapiens family with sequence
           similarity 47, member A protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 294 PPETLQDHLH*GTGTSRARGTHHSRSGPKRREDPRLRF-GQETRRTA--RHHHPHCRPHS 464
           PPET   H H     +R R + HS+  PK R    LR    +TRRT+  R   P  R  S
Sbjct: 470 PPETQVSHPHPEHPKTRRRSSLHSQP-PKTRRTSSLRSEPPKTRRTSSLRSEPPKTRRTS 528

Query: 465 AL 470
           +L
Sbjct: 529 SL 530


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.313    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,756,932
Number of Sequences: 237096
Number of extensions: 814693
Number of successful extensions: 2010
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)