Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O19
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    30   1.1  
U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 279 QRWSHPPETLQDHLH*GTGTSRARGTHHSRSGPKRREDPRLRF 407
           Q+  HPP ++  + H G G       HH +  P+  E P + F
Sbjct: 686 QQAQHPPASVASNGHNGYGNVDQNAHHHQQQQPQIAEQPLISF 728


>U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical
           protein C02G6.1 protein.
          Length = 980

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 354 THHSRSGPKRREDPRLRFGQETRRTARHHHP 446
           +HH+   P++ E     FGQ+ R + ++ HP
Sbjct: 457 SHHALHLPEKNEYIATNFGQKPRESVKNEHP 487


>Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical
           protein T27E9.9 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = -1

Query: 387 LFVLGLSGNDGCHGRGRCR----CLNEDDLVVFLGD--GSTADHLWALFFRFWWWDMDVD 226
           L V+G    DG HG  +CR    C+N  D      D   S    +  L F  W+W + + 
Sbjct: 342 LAVVGYLSRDGQHGSIKCRCSWLCMNCKDWTALKIDQMSSIVFPVSFLAFNIWYWFIFLG 401

Query: 225 VLL 217
            LL
Sbjct: 402 KLL 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,000,499
Number of Sequences: 27780
Number of extensions: 111113
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)