Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O19
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          27   0.14 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          26   0.24 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.32 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.8  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 420 RRTARHHHPHCRPHSALQTRSLLHQI 497
           R++   HH + RPH++L TR  L ++
Sbjct: 115 RKSVVFHHDNARPHTSLVTRQKLLEL 140


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 402 RFGQETRRTARHHHPHCRPHSALQTRSLLHQI 497
           RF    R+    HH   RPH+ L TR  L ++
Sbjct: 110 RFELTNRKGVVFHHDDARPHTYLVTRQKLLEL 141


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 420 RRTARHHHPHCRPHSALQTRSLLHQI 497
           R+    HH + RPH++L TR  L ++
Sbjct: 237 RKGVVFHHDNARPHTSLVTRQKLLEL 262


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 249 WWWDMDVDVLLYD 211
           WWW+M +  L +D
Sbjct: 366 WWWNMKISNLSFD 378


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 472 WRAEWGRQWGW 440
           W   WG QWG+
Sbjct: 285 WLVNWGEQWGF 295


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 353 HPSFPLRPKTKRRPSSTF 406
           H + P +P+TK +P+S +
Sbjct: 246 HATKPPKPQTKTKPTSPY 263


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 306 LQDHLH*GTGTSRARGTHHSRSGPKRREDPRLRFGQETR 422
           ++ HL  G G   A G       P+++++  +  G+E++
Sbjct: 188 VEAHLRKGRGAIGAYGPEKGPKVPEKKKEDEIDEGKESK 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,340
Number of Sequences: 438
Number of extensions: 1154
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)