Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O18
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    31   0.64 
01_04_0086 + 15916555-15916905,15917236-15917262                       30   1.1  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    29   1.5  
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    29   1.5  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    29   2.6  
03_05_1013 + 29680057-29680226,29682272-29682417,29683417-296834...    28   3.4  
03_05_1012 + 29670310-29670512,29670856-29671001,29671169-296712...    27   5.9  
02_05_0263 - 27257150-27259213                                         27   5.9  

>11_04_0438 -
           17737040-17737122,17737373-17737496,17737897-17738182,
           17738265-17738397,17738742-17738953,17739455-17739816,
           17739907-17739937,17744738-17745111
          Length = 534

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 329 TGENLYWYSTTDSTYKLNVDNAME-SWFNDYKDYKYAPLKQSDFDQSK 469
           T +  Y +  TD   K+ V+  M   + ND  D +  PLK  +FD+SK
Sbjct: 238 TNDKSYTFGFTDQGCKIFVEMFMAVKYVNDLYDDEQIPLKALNFDESK 285


>01_04_0086 + 15916555-15916905,15917236-15917262
          Length = 125

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 314 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNDYKDYKYA 436
           S R   GENL+W S           +A++SW  +  DY YA
Sbjct: 72  SNRNNLGENLFWGSAGGDW---TAASAVQSWVGEKSDYDYA 109


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 284 NFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFND 415
           N  NPDK++G  +    E  +   T DS    +++ AME+W  D
Sbjct: 406 NASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAWDTD 449


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 84  VLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 212
           + + S  ++  T HA KS  + T   IG+N+W  V  QD  ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/53 (22%), Positives = 21/53 (39%)
 Frame = -1

Query: 474 LGLDWSKSLCFKGAYXXXXXXXXXXXXXXSTFSLYVLSVVEYQYKFSPVWNLP 316
           +GLDWS    + G+                 F +Y+++ + Y + F    N P
Sbjct: 293 IGLDWSTVSSYLGSPLASPWFATANVAAGFFFIMYIITPIAYWFNFYKAQNFP 345


>03_05_1013 +
           29680057-29680226,29682272-29682417,29683417-29683493,
           29683577-29683699,29683781-29683849,29684824-29684925,
           29684998-29685078,29685161-29685313,29685442-29685513,
           29685773-29685936,29686046-29686091,29686268-29686337,
           29686509-29686594
          Length = 452

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 299 DKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNDYKDY 427
           D  +GSG F    +   Y+  D +  L V   ++ WFND+  Y
Sbjct: 139 DTPVGSG-FSYARDPKGYNVGDISSSLQVVTFLKKWFNDHPSY 180


>03_05_1012 +
           29670310-29670512,29670856-29671001,29671169-29671245,
           29671329-29671451,29671558-29671660,29672100-29672173,
           29672249-29672329,29672411-29672563,29672780-29672881
          Length = 353

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 299 DKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNDYKDYK 430
           D  +GSG F    +   Y   D +  L V   M+ W ND+  Y+
Sbjct: 150 DSPVGSG-FSYARDSNGYDVGDISSSLQVVTFMKEWLNDHPRYR 192


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 81  YVLDTSIVNLY*TCHANKSKISS 149
           Y+L+T IVNLY  C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,617
Number of Sequences: 37544
Number of extensions: 242059
Number of successful extensions: 455
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)