Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O18
(477 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical pr... 45 2e-05
Z70308-6|CAA94344.1| 207|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z70307-2|CAA94335.1| 208|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z70307-4|CAA94330.1| 209|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z70308-3|CAA94350.1| 207|Caenorhabditis elegans Hypothetical pr... 38 0.005
AC006655-2|AAF39876.1| 208|Caenorhabditis elegans Hypothetical ... 36 0.011
Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.015
AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical ... 30 0.75
Z70308-5|CAA94348.1| 207|Caenorhabditis elegans Hypothetical pr... 30 0.99
Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical pr... 28 4.0
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 27 7.0
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 27 7.0
AF025453-4|ABC48262.1| 905|Caenorhabditis elegans Hypothetical ... 27 9.2
AF025453-3|AAM98053.2| 828|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical
protein C39E9.5 protein.
Length = 209
Score = 45.2 bits (102), Expect = 2e-05
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Frame = +2
Query: 50 VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATE 217
++ L+LA+V C+G H++ + KQ VN HN R +AKG+ + +AT
Sbjct: 1 MQTALVLALV-CVG-AHAQ--FSEGGKQ--SMVNAHNAVRSSIAKGEYVAKGTKKDSATN 54
Query: 218 MKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW-YSTTDST-YKLNVDN 391
M M WD L H+PDK+ GENL+W YS++ T V +
Sbjct: 55 MLKMKWDNSLAQSAQNYANGCPMQHSPDKSY-------GENLFWAYSSSPITDLDKYVQS 107
Query: 392 AMESWFNDYK 421
A+++W ++++
Sbjct: 108 AVDTWVSEFQ 117
>Z70308-6|CAA94344.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.10 protein.
Length = 207
Score = 44.0 bits (99), Expect = 6e-05
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = +2
Query: 146 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 313
+N HN R +AKG + T + M WD + +N+ N T
Sbjct: 27 INAHNTLRSKIAKGTYVAKGTQKSPGTNLLKMKWDSAVAASA-------QNYANGCPTGH 79
Query: 314 SGRFQTGENLYWYSTTDSTYKLNV--DNAMESWFNDYKDY 427
SG GENLYWY T+ S LN A SW +++DY
Sbjct: 80 SGDAGLGENLYWYWTSGSLGDLNQYGSAASASWEKEFQDY 119
>Z70307-2|CAA94335.1| 208|Caenorhabditis elegans Hypothetical
protein C39E9.2 protein.
Length = 208
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +2
Query: 146 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 313
+N HN R +AKG + PAA++M M WD + + N T
Sbjct: 28 LNVHNTLRSRIAKGTYVAKGTAKPAASDMLKMKWDATVAASAQA-------YANKCPTGH 80
Query: 314 SGRFQTGENLYWYSTTDSTYKLNVDNAMES--WFNDYKDYKYA 436
SG GENLYWY T+ + ++ A S W +++DY ++
Sbjct: 81 SGAAGLGENLYWYWTSATITNIDQFGATGSAAWEKEFQDYGWS 123
>Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical
protein F09E8.5 protein.
Length = 208
Score = 38.3 bits (85), Expect = 0.003
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Frame = +2
Query: 146 VNGHNYRRQLLAKGQVSGHP----AATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 313
+N HN R +AKG AA++M M W L ++ + N T
Sbjct: 28 LNVHNTLRSRIAKGTYVARGTVKHAASDMLKMKWLRSLATS-------SQIYANRCPTGH 80
Query: 314 SGRFQTGENLYWYSTTDSTYKLNVDNAMES--WFNDYKDYKYA 436
S GENLYWY T+ + ++ AM S W +++DY ++
Sbjct: 81 SNMIGVGENLYWYWTSGTITNIDQFGAMASAAWEKEFQDYGWS 123
>Z70307-4|CAA94330.1| 209|Caenorhabditis elegans Hypothetical
protein C39E9.4 protein.
Length = 209
Score = 38.3 bits (85), Expect = 0.003
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Frame = +2
Query: 146 VNGHNYRRQLLAKG--QVSG--HPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 313
V+ HN R LA G ++G PA + ++ M WD L + + N T
Sbjct: 29 VDLHNSFRSKLATGTYSINGTLKPAGSNIRKMSWDSTLATSA-------QTYANTCPTGF 81
Query: 314 SGRFQTGENLYWYSTTDSTYKLNV--DNAMESWFNDYKDYKYA 436
S TGENLYW +T+ + L++ A SW +++ Y +A
Sbjct: 82 SNTQGTGENLYWRTTSANISGLDIYGGAASVSWEQEFQKYGWA 124
>Z70308-3|CAA94350.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.6 protein.
Length = 207
Score = 37.5 bits (83), Expect = 0.005
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Frame = +2
Query: 65 ILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATEMKYMV 232
+L +V CI V S+ S Q + V+ HN R +AKG + + + M+ +
Sbjct: 4 LLLLVCCIAGVFSQFT---STGQ-QAIVDAHNKLRSSIAKGTYVAKGTTQKSGSNMRKIK 59
Query: 233 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNV--DNAMESW 406
WD + +N+ N T S GENLYWY T+ + L+ A SW
Sbjct: 60 WDATVATSA-------QNYANTCPTGHSQGSGYGENLYWYWTSGTIGNLDTFGPAASSSW 112
Query: 407 FNDYKDY 427
++++ Y
Sbjct: 113 ESEFQQY 119
>AC006655-2|AAF39876.1| 208|Caenorhabditis elegans Hypothetical
protein H10D18.4 protein.
Length = 208
Score = 36.3 bits (80), Expect = 0.011
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Frame = +2
Query: 68 LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATEMKYMVW 235
+ +C+ + + S V+ HN R +A+G + P+A+ M+ +VW
Sbjct: 1 MKFALCLLAIFGCATAQFSSTAQGQIVDAHNKLRSAIAQGSYVAAGTQEPSASNMRKIVW 60
Query: 236 DEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW---YSTTDSTYKLNVDNAMESW 406
DE + Q PD G+ GENLYW S S K V A SW
Sbjct: 61 DETV-----AAAAQEYAEGCPDDHSGT---SYGENLYWSWSSSAPSSLDKFGV-AASNSW 111
Query: 407 FNDYKDY 427
++++ Y
Sbjct: 112 ESEFQKY 118
>Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical
protein F49E11.5 protein.
Length = 212
Score = 35.9 bits (79), Expect = 0.015
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +2
Query: 155 HNYRRQLLAKGQ-VSGH---PAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGR 322
HNY R +A G+ V+G+ P+A+ M ++WD L H+ + R
Sbjct: 34 HNYLRSQIALGKYVAGNSTKPSASNMMKLIWDTTLETTAQDYSTGCPTGHS------ASR 87
Query: 323 FQTGENLYWYST---TDSTYKLNVDNAMESWFNDYKDY 427
GEN+YW+++ T + +L + + W ++++ +
Sbjct: 88 ANIGENMYWWTSPVVTQTDAELLGNRSANLWESEFQRF 125
>AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical
protein F02E11.5 protein.
Length = 207
Score = 30.3 bits (65), Expect = 0.75
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +2
Query: 50 VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKG-----QVSGHPAAT 214
+RAL++LA+V + V+ + S K V+ HN R +AKG + P +
Sbjct: 1 MRALILLAVVASVS-VYGQ----FSKAGQKAIVDAHNTLRSSIAKGTYVANKTRKEPGSN 55
Query: 215 EMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW 349
+K M WD + + N T G G+ + GENLYW
Sbjct: 56 ILK-MKWDPTIAKSAQA-------YANTCPT-GHGKSKYGENLYW 91
>Z70308-5|CAA94348.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.9 protein.
Length = 207
Score = 29.9 bits (64), Expect = 0.99
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = +2
Query: 146 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 313
V+ HN R +AK + AT+M+ MV D + +N+ N T
Sbjct: 25 VDAHNKLRSAIAKSTYVAKGTKKEPATDMRKMVVDSTVAASA-------QNYANTCPTGH 77
Query: 314 SGRFQTGENLYWYSTTDSTYKLNV--DNAMESWFNDYKDY 427
S GENLYW T+ L+ + A +W +++D+
Sbjct: 78 SKGTGYGENLYWSWTSADVGSLDSYGEIAAAAWEKEFQDF 117
>Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.1 protein.
Length = 401
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 195 DT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 100
D LA NC+ ++K +IC+H S DL+
Sbjct: 217 DAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 293 NPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNDYKDY 427
N +K + R T E YW T TY++N+ M DY+D+
Sbjct: 550 NKEKANFTARVITPE--YW--PTYDTYEINIPKEMRDTLTDYQDF 590
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 293 NPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNDYKDY 427
N +K + R T E YW T TY++N+ M DY+D+
Sbjct: 587 NKEKANFTARVITPE--YW--PTYDTYEINIPKEMRDTLTDYQDF 627
>AF025453-4|ABC48262.1| 905|Caenorhabditis elegans Hypothetical
protein C08F1.5b protein.
Length = 905
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 149 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 238
NGHNY++ + K + +G TE ++ WD
Sbjct: 587 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 614
>AF025453-3|AAM98053.2| 828|Caenorhabditis elegans Hypothetical
protein C08F1.5a protein.
Length = 828
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 149 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 238
NGHNY++ + K + +G TE ++ WD
Sbjct: 510 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 537
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,795
Number of Sequences: 27780
Number of extensions: 215172
Number of successful extensions: 527
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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