Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O17
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 166 1e-42
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 157 4e-40
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 83 2e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 59 2e-10
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 33 0.015
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 29 0.19
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 2.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 4.1
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 5.4
SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe... 24 7.1
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 24 7.1
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 24 7.1
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 24 7.1
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 24 7.1
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 24 9.4
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 24 9.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 166 bits (403), Expect = 1e-42
Identities = 77/110 (70%), Positives = 88/110 (80%)
Frame = +3
Query: 9 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 188
++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLD
Sbjct: 163 MEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLD 222
Query: 189 IERPTYTNLNRLIGQIVSSITASLRIDGALNCRSNGVPEQLGALPTYPFP 338
IERPTY NLNRLI Q+VSSITASLR G+LN N L P FP
Sbjct: 223 IERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFP 272
Score = 66.9 bits (156), Expect = 1e-12
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1
Query: 283 VDLTEFQNNLVPYPRIHFPLVTYAPVISAEKAYH 384
VDL EFQ NLVPYPRIHFPLVTY+P++SA KA+H
Sbjct: 254 VDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFH 287
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 157 bits (382), Expect = 4e-40
Identities = 73/110 (66%), Positives = 87/110 (79%)
Frame = +3
Query: 9 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 188
++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLD
Sbjct: 159 MEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLD 218
Query: 189 IERPTYTNLNRLIGQIVSSITASLRIDGALNCRSNGVPEQLGALPTYPFP 338
IERP+Y NLNRLI Q+VSSITASLR +G+LN L P FP
Sbjct: 219 IERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFP 268
Score = 68.1 bits (159), Expect = 4e-13
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +1
Query: 283 VDLTEFQNNLVPYPRIHFPLVTYAPVISAEKAYH 384
VDL EFQ NLVPYPRIHFPLVTYAP++SA KA+H
Sbjct: 250 VDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFH 283
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 82.6 bits (195), Expect = 2e-17
Identities = 37/92 (40%), Positives = 56/92 (60%)
Frame = +3
Query: 6 RVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 185
R +Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L
Sbjct: 156 REEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTL 215
Query: 186 DIERPTYTNLNRLIGQIVSSITASLRIDGALN 281
I+ P+Y +LN L+ +++ +T S R G LN
Sbjct: 216 KIKSPSYDDLNHLVSAVMAGVTTSFRFPGELN 247
Score = 32.7 bits (71), Expect = 0.020
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 286 DLTEFQNNLVPYPRIHFPLVTYAPV 360
DL + N+VP+PR+HF +V +AP+
Sbjct: 249 DLRKLAVNMVPFPRLHFFMVGFAPL 273
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.3 bits (137), Expect = 2e-10
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +3
Query: 15 YGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 191
Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I L
Sbjct: 161 YPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHT 220
Query: 192 ERPTYTNLNRLIGQIVSSITASLRIDGALN 281
+ PT+ N+L+ ++S+ T +LR G +N
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMN 250
Score = 27.9 bits (59), Expect = 0.58
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 286 DLTEFQNNLVPYPRIHFPLVTYAP 357
DL +L+P PR HF L +Y P
Sbjct: 252 DLVSIIASLIPSPRCHFLLTSYTP 275
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 33.1 bits (72), Expect = 0.015
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Frame = +3
Query: 45 IYPAPQ----VSTAVVEPYNSILTTHTTLEHSDCAF--MVDNEAIYDICRRNLDIERPTY 206
I+P PQ + +++ SIL H L F + D E I + R+NL E +
Sbjct: 151 IFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIADWEQI-QMLRKNLPSETVLF 209
Query: 207 TNLNRLIGQIVSSITASLRIDGALNCRSNGVPEQLGALPTYPFPTGHVRSSHLCREGL 380
N N L Q + +DG L+ + ++ P+ P T + R +C E L
Sbjct: 210 ANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPPSSPLMTLYPRIDDMCEEYL 267
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 29.5 bits (63), Expect = 0.19
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 130 IVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYH 243
++ S+ T KP + TW +N R P S+ + H
Sbjct: 37 VIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGH 74
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 187 ILNARPTPTSIVLSARSYHRL 249
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/62 (22%), Positives = 24/62 (38%)
Frame = +1
Query: 145 STMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSIVDLTEFQNNLVPYP 324
S + +T A ++ P S+ Y RL + VS S+ + +NN
Sbjct: 1085 SVLLQRLTKAGTATLMEIVPCLCSLFTRLNDYERLKKIVVSCLKSLEEARHSENNFQKMV 1144
Query: 325 RI 330
R+
Sbjct: 1145 RL 1146
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 38 VRYLSRTPGVHCCCRALQLYPYN 106
V ++S+ P H C L + PYN
Sbjct: 627 VGHISQLPKAHTCFNRLDIPPYN 649
>SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 234 IVSSITAS-LRIDGALNCRSNGVPEQLGALPTYPFPTGHVRS 356
+V S+ S L DG + C+ + EQ+ +P P P+ + S
Sbjct: 67 VVPSVNDSELSRDGLVLCKRRLMLEQIRLVPKNPSPSSSIHS 108
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 24.2 bits (50), Expect = 7.1
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +3
Query: 75 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 254
V E +I + L SD +NE YDI +N + E N I + + +
Sbjct: 47 VEEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAAS 106
Query: 255 SLRID 269
+ I+
Sbjct: 107 KILIE 111
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 256 LCVSTAPSIVDLTEFQNNL 312
+C+ T IVDL EF+++L
Sbjct: 661 ICIKTLKVIVDLREFRSSL 679
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 97 IEL*GSTTAVDTWGAG 50
IEL G+TTA D W G
Sbjct: 176 IELVGATTASDIWSVG 191
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 178 VTWILNARPTPTSIVLSARSYHRLPP 255
V W +RP S V+ AR H LPP
Sbjct: 67 VIWGTVSRPHGNSGVVRARFTHNLPP 92
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 152 IVDHESTIGVFQGGVGCKDRVVGLYNSSG 66
+VD E+ I QGG GC +G ++ +G
Sbjct: 95 VVDSETFIVWLQGGPGCAG-TLGFFSENG 122
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 241 HRLPPLCVSTAPSIVDLTEFQNNLVPYPR 327
HRLP L V T TEF N P P+
Sbjct: 336 HRLPKLNVKTGLLENSYTEFSLNEHPLPK 364
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 274 PSIVDLTEFQNNLVPYPRIHFPLVTYAPVI 363
P + +LTEF N +P+ R+ + + PVI
Sbjct: 527 PILRNLTEFYNIAIPWLRLSGLALCHDPVI 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,932
Number of Sequences: 5004
Number of extensions: 34632
Number of successful extensions: 122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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