Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O16
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    28   0.97 
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    27   1.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.0  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   9.0  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 101 SRYENRHTTEQDSRPLQSSRLPGIEELTLG 190
           S+    +T  +D +PLQS++LPG   LT+G
Sbjct: 357 SKPSKPNTLTEDEKPLQSTKLPG-NSLTVG 385


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 235 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQ 336
           + I+K++P + + +LLEQ   +AE+   +  KKQ
Sbjct: 88  FSIKKRKPHNHIPQLLEQCTCIAESFEGIYTKKQ 121


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 313 RRLQEKKQPCHEISVDS*FINKTF*L*KCGTCCEI---ACVQETCR 441
           R + E K   +E SV +  IN +  +  CGTC  +   +C+++ C+
Sbjct: 185 RMIVELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCK 230


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 209  SKLGPVLHLITLESKNLSIS*KDYWNN 289
            S LGP L   T  SK  +++  D W N
Sbjct: 1313 SGLGPTLEFYTSVSKEFTLNSLDIWRN 1339


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 431 SCTQAISQHVPHFHN 387
           SC +A+ + +PH+HN
Sbjct: 454 SCAEALVKVIPHYHN 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,498
Number of Sequences: 5004
Number of extensions: 50303
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)