Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O16
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0225 + 13960843-13962417                                         30   1.7  
08_01_0875 - 8584345-8584556,8584653-8584752,8584837-8584939,858...    29   3.0  
07_01_0707 - 5335643-5336905                                           28   5.3  
01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041     28   5.3  
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096...    27   9.3  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    27   9.3  

>01_03_0225 + 13960843-13962417
          Length = 524

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 544 RAAILLRSRDSCRARHVIAGHPFLSRCPHIAP 449
           RAAI + SR+      V  GH F SR P IAP
Sbjct: 83  RAAIFVSSREVTHRALVQRGHTFASRPPAIAP 114


>08_01_0875 -
           8584345-8584556,8584653-8584752,8584837-8584939,
           8585505-8585645,8585756-8585916,8585997-8586053,
           8586401-8586475,8587747-8587986
          Length = 362

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 494 DVSRTTRVTRTKQNGRTYSTFYNHNIYFS 580
           D+S T+R+  T  +GR++S  + ++ YFS
Sbjct: 192 DLSLTSRIRNTNTDGRSFSYTFAYHTYFS 220


>07_01_0707 - 5335643-5336905
          Length = 420

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 403 TCCEIACVQETCRVTMVLYADSATERDDQL*RVSHDTSHENE 528
           TC ++ACV  T R   VL+  +    DD L    HD + EN+
Sbjct: 121 TCGDLACVVGTDRRARVLHPVTGAGADDPL---PHDLAEENK 159


>01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041
          Length = 301

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +1

Query: 190 PETKLHLQARARAAPYYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCHEISVDS*F 369
           P ++ HL A A  A +    Q  VDL+E+L+       E   RLQ +++  H +     F
Sbjct: 79  PMSRDHLDAAAGGAFFSKTVQGAVDLIEKLVSNMGWSEE---RLQTRQRGMHTVKEMELF 135

Query: 370 INKTF*L*KC 399
             K   L KC
Sbjct: 136 AAKLDLLMKC 145


>10_08_0858 -
           21108283-21108387,21108820-21108889,21109490-21109646,
           21109930-21110062,21110409-21110583,21113353-21113453,
           21113620-21113706,21115871-21115931,21116114-21116178,
           21116534-21117631
          Length = 683

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 394 KCGTCCEIACVQETCRVTMVLYADSATERD 483
           K G+    AC    C V MVLY     ER+
Sbjct: 366 KLGSASASACADAECHVAMVLYCPLIKERE 395


>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
            24258994-24260065,24260241-24260563,24260647-24260835,
            24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +1

Query: 232  PYYIRKQEPVDL-VERLLEQRAL-VAEAVRRLQEKKQ 336
            P   +KQ P  + V+R +  +AL VAEAV+R ++KKQ
Sbjct: 1014 PLVKQKQRPTTVCVKRDVRVKALEVAEAVKRREQKKQ 1050


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,808
Number of Sequences: 37544
Number of extensions: 324721
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)