Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O16
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55365-7|AAN84869.1|  133|Caenorhabditis elegans Nuclear hormone...    29   2.7  
U55365-6|AAN84868.1|  338|Caenorhabditis elegans Nuclear hormone...    29   2.7  
AY204182-1|AAO39186.1|  338|Caenorhabditis elegans nuclear recep...    29   2.7  
AF273838-1|AAG15185.1|  273|Caenorhabditis elegans nuclear recep...    29   2.7  
AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z83318-4|CAB05900.1|  145|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   4.8  
U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U55365-7|AAN84869.1|  133|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 94, isoform b protein.
          Length = 133

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCHEISVDS 363
           YY+   +P D + ++ E   L+ +  R LQE+ Q C   +V +
Sbjct: 78  YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 120


>U55365-6|AAN84868.1|  338|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 94, isoform a protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCHEISVDS 363
           YY+   +P D + ++ E   L+ +  R LQE+ Q C   +V +
Sbjct: 283 YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 325


>AY204182-1|AAO39186.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-94 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCHEISVDS 363
           YY+   +P D + ++ E   L+ +  R LQE+ Q C   +V +
Sbjct: 283 YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 325


>AF273838-1|AAG15185.1|  273|Caenorhabditis elegans nuclear receptor
           NHR-94 protein.
          Length = 273

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCHEISVDS 363
           YY+   +P D + ++ E   L+ +  R LQE+ Q C   +V +
Sbjct: 218 YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 260


>AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical
           protein Y66D12A.3 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 447 CNPTRFLHTSD-FTTRSTLSQLKC 379
           CNPT FLH  + FTT S L  + C
Sbjct: 81  CNPTEFLHDVEVFTTLSALRSVIC 104


>Z83318-4|CAB05900.1|  145|Caenorhabditis elegans Hypothetical
           protein F55B11.4 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 479 LSVALSAYSTIVTRHVSCTQAISQHVPHFHN*NVLFINYESTDIS*HGCFFSC 321
           + VA + Y       VSC   I+QH P       +  N+  T IS  GC   C
Sbjct: 12  VGVANAIYCNSCDDFVSCGSPITQHCPRHSGCYTMTTNFGQTVIS-KGCAHDC 63


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 222  GPSLE-VKLCFRPRVSSSIPGNLLDCSGRLSCSVV*RFSYLDFSFNIMMDNGLDLLCN 52
            G S E +K    P V  SIP +L+D   +LS S      +LD S  I+    LD  C+
Sbjct: 1840 GTSRENIKAELPPTVEVSIP-DLMDAEAKLSWSEDQNDRFLDLSTQILRTGALDPKCS 1896


>U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical
           protein F54E7.5 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 466 CPHIAPL*PDTFLAHKRFHNTFHTFTIKMFCL*IMNLQIFHDTVVSFLVT 317
           CP    + PDTF A+K F   F T  + + CL ++ L  F   ++ F +T
Sbjct: 164 CPPPTTIAPDTFTANKSF--IFSTQHLLIACLILLCLTTF--CIIVFFIT 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,639,631
Number of Sequences: 27780
Number of extensions: 298817
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)