Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O16
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.46 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   7.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 323 CNLRTASATRARCSNSLSTRSTGS 252
           C+L TAS+T +  S+  S RS GS
Sbjct: 176 CSLGTASSTSSTASSRNSDRSAGS 199


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 159 LLDCSGRLSCSVV*RFSYLDFSFNIMMDNGLDLLCNGLEISP 34
           +L  S R+   V+  F + D +F I++ N  DL+ N   ISP
Sbjct: 376 VLAVSNRIQ-KVIYGFDFNDVNFRILIANVNDLIKNTRCISP 416


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = -2

Query: 276 SFYEIDRFLLSNVIRCSTGPSLEVKLCFRPRVSSSIPGNLLDCSGRLS 133
           ++  ++ +L +  I       + +++ F  R  S  PGN L C    S
Sbjct: 65  AYNNVNNWLWTPFIERGPANRMYIEIKFTTRDCSLFPGNALSCKETFS 112


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 496 RVSHDTSHENEAKWPH 543
           +++ DT+ ENE  +PH
Sbjct: 69  KLATDTTSENEENYPH 84


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 476 SVALSAYSTIVTRHVSCTQAISQHVPHFHN*NVLFI 369
           S+ALS ++ I+T  +   Q +S  VP++ +    F+
Sbjct: 322 SLALSVFALILTALLRKMQEMSIEVPYWISTTTSFV 357


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/39 (20%), Positives = 18/39 (46%)
 Frame = +2

Query: 470 RQKGMTSYDVSRTTRVTRTKQNGRTYSTFYNHNIYFSFI 586
           R +     + SR  ++  +  N   ++  YN  +Y++ I
Sbjct: 299 RSRDRIERERSREPKIISSLSNNTIHNNNYNKKLYYNII 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,540
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)